Scientific papers

Scientific papers

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Albasha R, Bartlett MK (2024) The stomatal traits that conserve water without compromising grapevine carbon gain depend on climate change severity and wine-growing region. Agricultural and Forest Meteorology 347: 109892. doi:109892.

Bontpart T, Weiss A, Vile D, Gérard F, Lacombe B, Reichheld J-P, Mari S (2024) Growing on calcareous soils and facing climate change. Trends in Plant Science 263910.1016/j.tplants.2024.03.013.

Coupel-Ledru A, Westgeest AJ, Albasha R, Millan M, Pallas B, Doligez A, Flutre T, Segura V, This P, Torregrosa L, Simonneau T, Pantin F (2024) Clusters of grapevine genes for a burning world. New Phytologist n/a

Guo S, Zhang M, Feng M, Liu G, Torregrosa L, Tao X, Ren R, Fang Y, Zhang Z, Meng J, Xu T (2024) miR156b-targeted VvSBP8/13 functions downstream of the abscisic acid signal to regulate anthocyanins biosynthesis in grapevine fruit under drought. Horticulture research 11: uhad293. doi:10.1093/hr/uhad293.

Nguyen HA, Martre P, Collet C, Draye X, Salon C, Jeudy C, Rincent R, Muller B (2024) Are high-throughput root phenotyping platforms suitable for informing root system architecture models with genotype-specific parameters? An evaluation based on the root model ArchiSimple and a small panel of wheat cultivars. Journal of Experimental Botany 75: 2510-2526. doi:10.1093/jxb/erae009.

Przybylska M, Stefania, Violle C, Vile D, Scheepens J, F, Munoz F, Tenllado Á, Vinyeta M, Le Roux X, Vasseur F (2024) Can plants build their niche through modulation of soil microbial activities linked with nitrogen cycling? A test with Arabidopsis thaliana. New Phytologist 243: 620–635.

Tolleter D, Smith E, N, Dupont-Thibert C, Uwizeye C, Vile D, Gloaguen P, Falconet D, Finazzi G, Vandenbrouck Y, Curien G (2024) The Arabidopsis leaf quantitative atlas: a cellular and subcellular mapping through unified data integration. Quantitative Plant Biology 5: e2. doi:10.1017/qpb.2024.1.

Vargas-Rojas F, Cabrera-Bosquet L, Symeonidou D (2024) QAVAN: Query-answering approach for actionable numerical relationships over Knowledge Graphs. Knowledge-Based Systems 284: 111252. doi:10.1016/j.knosys.2023.111252.

Wilhelm de Almeida L, Ojeda H, Pellegrino A, Torregrosa L (2024) Carbon trade-offs in the fruits of fungus-tolerant Muscadinia × Vitis hybrids exposed to water deficit. Plant physiology and biochemistry 212: 108774.

Wilhelm de Almeida L, Pastenes C, Ojeda H, Torregrosa L, Pellegrino A (2024) Water deficit differentially modulates leaf photosynthesis and transpiration of fungus-tolerant Muscadinia x Vitis hybrids. Frontiers in Plant Science 15: 1405343. .

Zhang Y, Pichon L, Roux S, Pellegrino A, Simonneau T, Tisseyre B (2024) Why make inverse modeling and which methods to use in agriculture? A review. Computers and Electronics in Agriculture 217: 108624. doi:10.1016/j.compag.2024.108624.


Baekelandt A, Saltenis V, L R, Nacry P, Malyska A, Cornelissen M, Nanda A, Kaur, Nair A, Rogowsky P, Pauwels L, Muller B, Collén J, Blomme J, Pribil M, Scharff L, B, Davies J, Wilhelm R, Rolland N, Harbinson J, Boerjan W, Murchie E, H, Burgess A, J, Cohan Jp, Debaeke P, Thomine S, Inzé D, Lankhorst R, Klein, Parry M, a J (2023) Paving the way towards future‐proofing our crops. Food and Energy Security: e441. doi:10.1002/fes3.441.

Bouidghaghen J, Moreau L, Beauchêne K, Chapuis R, Mangel N, Cabrera-Bosquet L, Welcker C, Bogard M, Tardieu F (2023) Robotized indoor phenotyping allows genomic prediction of adaptive traits in the field. Nature Communications 14: 6603. doi:10.1038/s41467-023-42298-z.

Burgess A, J, Masclaux-Daubresse C, Strittmatter G, Weber A, P. M., Taylor SH, Harbinson J, Yin X, Long S, Paul M, Westhoff P, Loreto F, Ceriotti A, Saltenis V, L R, Pribil M, Nacry P, Scharff L, B, Jensen PE, Muller B, Cohan Jp, Foulkes J, Rogowsky P, Debaeke P, Meyer C, Nelissen H, Inzé D, Klein Lankhorst R, Parry M, Murchie E, H, Baekelandt A (2023) Improving crop Yield potential : Underlying biological processes and future prospects. Food and Energy Security 12: e435. doi:10.1002/fes3.435.

Choquette N, E, Holland J, B, Weldekidan T, Drouault J, de Leon N, Flint‐garcia S, Lauter N, Murray S, C, Xu W, Wisser R, J (2023) Environment‐specific selection alters flowering‐time plasticity and results in pervasive pleiotropic responses in maize. New Phytologist 238: 737 - 749. doi:10.1111/nph.18769.

Choquette N, Weldekidan T, Brewer J, Davis S, Wisser R, J., Holland J (2023) Enhancing adaptation of tropical maize to temperate environments using genomic selection. G3 1310.1093/g3journal/jkad141.

Daviet B, Fournier C, Cabrera-Bosquet L, Simonneau T, Cafier M, Romieu C (2023) Ripening dynamics revisited: an automated method to track the development of asynchronous berries on time-lapse images. Plant Methods 19: 146. doi:10.1186/s13007-023-01125-8.

Dueri S, Léonard J, Chlebowski F, Rosso P, Berg-Mohnicke M, Nendel C, Ehrhardt F, Martre P (2023) Sources of uncertainty in simulating crop N2O emissions under contrasting environmental conditions. Agricultural and Forest Meteorology 340: 109619. doi:10.1016/j.agrformet.2023.109619.

Ernest E, G, Wisser R, J (2023) Multiple physiological mechanisms involved in reproduction could be targeted for breeding heat tolerance in lima bean. Crop Science 64: 179 - 191. doi:10.1002/csc2.21167.

Fang L, Martre P, Jin K, Du X, van der Putten P, E L, Yin X, Struik P, C (2023) Neglecting acclimation of photosynthesis under drought can cause significant errors in predicting leaf photosynthesis in wheat. Global Change Biology 29: 505-521. doi:10.1111/gcb.16488.

Guarin J, Martre P, Ewert F, Webber H, Dueri S, Calderini D, Reynolds M, Molero G, Miralles D, Garcia G, Slafer G, Giunta F, Pequeno D, Stella T, Ahmed M, Alderman P, Basso B, Berger A, Bindi M, Bracho-Mujica G, Cammarano D, Chen Y, Dumont B, Eyshi Rezaei E, Fereres E, Ferrise R, Gaiser T, Gao Y, Garcia-Vila M, Gayler S, Hochman Z, Hoogenboom G, Hunt L, Kersebaum K, Nendel C, Olesen J, Palosuo T, Priesack E, Pullens J, Rodriguez A, Rotter R, Ruiz Ramos M, Semenov M, Senapati N, Siebert S, Srivastava A, Stockle C, Supit I, Tao F, Thorburn P, Wang E, Weber T, Xiao L, Zhang Z, Zhao C, Zhao J, Zhao Z, Zhu Y, Asseng S (2023) A high-yielding traits experiment for modeling potential production of wheat: field experiments and AgMIP-Wheat multi-model simulations. Open Data Journal for Agricultural Research 9: 26-33. doi:10.18174/odjar.v9i0.18573.

Knowling M, Walker R, Pellegrino A, Edwards E, Westra S, Collins C, Ostendorf B, Bennett B (2023) Generalized water production relations through process-based modeling: A viticulture example. Agricultural Water Management 280: 108225. doi:10.1016/j.agwat.2023.108225.

Knowling M, J, White J, T, Grigg D, Collins C, Westra S, Walker R, R, Pellegrino A, Ostendorf B, Bennett B, Alzraiee A (2023) Operationalizing crop model data assimilation for improved on-farm situational awareness. Agricultural and Forest Meteorology 338: 109502. doi:10.1016/j.agrformet.2023.109502.

Lima D, Cristina, Aviles A, Castro, Alpers R, Timothy, Mcfarland B, A, Kaeppler S, Ertl D, Romay M, Cinta, Gage J, L, Holland J, Beissinger T, Bohn M, Buckler E, Edwards J, Flint-Garcia S, Hirsch C, N, Hood E, Hooker D, C, Knoll J, E, Kolkman J, M, Liu S, Mckay J, Minyo R, Moreta D, E, Murray S, C, Nelson R, Schnable J, C, Sekhon R, S, Singh M, P, Thomison P, Thompson A, Tuinstra M, Wallace J, Washburn J, D, Weldekidan T, Wisser R, J, Xu W, de Leon N (2023) 2018–2019 field seasons of the Maize Genomes to Fields (G2F) G x E project. Bmc Genomic Data 24: 29. doi:10.1186/s12863-023-01129-2.

Luchaire N, Torregrosa L, Gibon Y, Rienth M, Romieu C, Ageorges A, Turc O, Muller B, Pellegrino A (2023) A low carbon balance triggers Microvine inflorescence abscission at high temperatures. Frontiers in Horticulture 2: 1267429. doi:10.3389/fhort.2023.1267429.

Merlino M, Gaudin JC, Dardevet M, Martre P, Ravel C, Boudet J (2023) Wheat DOF transcription factors TaSAD and WPBF regulate glutenin gene expression in cooperation with SPA. PLoS ONE 1810.1371/journal.pone.0287645.

Merot A, Coulouma G, Smits N, Robelot E, Gary C, Guerin Dubrana L, Poulmarch J, Burgun X, Pellegrino A, Fermaud M (2023) A systemic approach to grapevine decline diagnosed using three key indicators: plant mortality, yield loss and vigour decrease. OENO One 5710.20870/oeno-one.2023.57.1.5575.

Merot A, Coulouma G, Smits N, Robelot E, Gary C, Guerin Dubrana L, Poulmarch J, Burgun X, Pellegrino A, Fermaud M (2023) Mortality and vigour based indicators for an early diagnosis of vineyard decline. IVES Technical Reviews vine and wine 5710.20870/ives-tr.2023.7758.

Midingoyi CA, Pradal C, Enders A, Fumagalli D, Lecharpentier P, Raynal H, Donatelli M, Fanchini D, Athanasiadis I, Porter C, Hoogenboom G, Oliveira FAA, Holzworth D, Martre P (2023) Crop modeling frameworks interoperability through bidirectional source code transformation. Environmental Modelling and Software 168: 105790. doi:10.1016/j.envsoft.2023.105790.

Millan M, Simonneau T, Coupel-Ledru A, Boulord R, Christophe A, Pallas B (2023) Relationships between leaf temperature, stomatal conductance and architecture: potential impact on leaf burning among a range of genotypes in grapevine. OENO One 57: 345-359. doi:10.20870/oeno-one.2023.57.2.7438.

Neelakandan A, Kabahuma M, Yang Q, Lopez M, Wisser R, J., Balint-Kurti P, Lauter N (2023) Characterization of integration sites and transfer DNA structures in Agrobacterium -mediated transgenic events of maize inbred B104. G3 13: kad166. doi:10.1093/g3journal/jkad166.

Nguyen N, N T, Lamotte O, Alsulaiman M, Ruffel S, Krouk G, Berger N, Demolombe V, Nespoulous C, Nguyet Dang TM, Aimé S, Vile D, Dubos C, Berthomieu P, Wendehenne D, Gosti F (2023) Reduction in PLANT DEFENSIN 1 expression in Arabidopsis thaliana results in increased resistance to pathogens and zinc toxicity. Journal of Experimental Botany 74: 5374-5393. doi:10.1093/jxb/erad228.

Nóia Júnior R, de S, Deswarte Jc, Cohan Jp, Martre P, van der Velde M, Lecerf R, Webber H, Ewert F, Ruane A, C, Slafer G, A, Asseng S (2023) The extreme 2016 wheat yield failure in France. Global Change Biology 29: 3130-3146. doi:10.1111/gcb.16662.

Ollat N, Marguerit E, de Miguel M, Coupel-Ledru A, Cookson S, Jane, van Leeuwen C, Vivin P, Gallusci P, Segura V, Duchêne E (2023) Moving towards grapevine genotypes better adapted to abiotic constraints. Vitis 62: 67-76. doi:10.5073/vitis.2023.62.special-issue.67-76.

Pereyra G, Pellegrino A, Ferrer M, Gaudin R (2023) How soil and climate variability within a vineyard can affect the heterogeneity of grapevine vigour and production. OENO One 57: 297-313. doi:10.20870/oeno-one.2023.57.3.7498.

Przybylska M, Stefania, Violle C, Vile D, Scheepens J, F, Lacombe B, Le Roux X, Perrier L, Sales-Mabily L, Laumond M, Vinyeta M, Moulin P, Beurier G, Rouan L, Cornet D, Vasseur F (2023) AraDiv: a dataset of functional traits and leaf hyperspectral reflectance of Arabidopsis thaliana. Scientific Data 1010.1038/s41597-023-02189-w.

Rezaei EE, Webber H, Asseng S, Boote K, Durand J-L, Ewert F, Martre P, Maccarthy DS (2023) Climate change impacts on crop yields. Nature Reviews Earth & Environment 4: 831-846. doi:10.1038/s43017-023-00491-0.

Savoi S, Torregrosa L, Romieu C (2023) Single berry development - a new phenotyping and transcriptomics paradigm. Vitis 62: 49–55. doi:10.5073/vitis.2023.62.special-issue.49-55.

Tiffon-Terrade B, Simonneau T, Caffarra A, Boulord R, Péchier P, Saurin N, Romieu C, Fumey D, Christophe A (2023) Delayed grape ripening by intermittent shading to counter global warming depends on carry-over effects and water deficit conditions. OENO One 57: 71-90. doi:10.20870/oeno-one.2023.57.1.5521.

Vasseur F, Violle C, Enquist B, J, Vile D (2023) Genetic variability and plasticity of plant allometry. Functional Ecology In press 10.1111/1365-2435.14281.

Westgeest AJ, Dauzat M, Simonneau T, Pantin F (2023) Leaf starch metabolism sets the phase of stomatal rhythm. Plant Cell 35: 3444-3469. doi:10.1093/plcell/koad158.

Wilhelm de Almeida L, Pellegrino A, Fontez B, Torregrosa L, Ojeda H (2023) Short and long-term acclimation to water status at leaf and plant level of fungus-tolerant genotypes. OENO One 57: 203-218. doi:10.20870/oeno-one.2023.57.2.7431.

Wilhelm de Almeida L, Torregrosa LJ-M, Dournes G, Pellegrino A, Ojeda H, Roland A (2023) Effet de la contrainte hydrique sur l’accumulation des précurseurs de thiols dans les raisins de variétés tolérantes aux maladies fongiques. Revue Française d'Oenologie 318.

Wilhelm de Almeida L, Torregrosa LJ-M, Dournes G, Pellegrino A, Ojeda H, Roland A (2023) New Fungus-Resistant Grapevine Vitis and V. vinifera L. × M. rotundifolia Derivative Hybrids Display a Drought-Independent Response in Thiol Precursor Levels. Journal of Agricultural and Food Chemistry 10.1021/acs.jafc.2c08595.


Affortit P, Effa-Effa B, Ndoye MS, Moukouanga D, Luchaire N, Cabrera-Bosquet L, Peralvarez M, Pilloni R, Welcker C, Champion A, Gantet P, Diedhiou AG, Manneh B, Aroca R, Vadez V, Laplaze L, Cubry P, Grondin A (2022) Physiological and genetic control of transpiration efficiency in African rice, Oryza glaberrima Steud. Journal of Experimental Botany 73: 5279-5293. doi:10.1093/jxb/erac156.

Blankenagel S, Eggels S, Frey M, Grill E, Bauer E, Dawid C, Fernie AR, Haberer G, Hammerl R, Barbosa Medeiros D, Ouzunova M, Presterl T, Russ V, Schaufele R, Schluter U, Tardieu F, Urbany C, Urzinger S, Weber APM, Schon C-C, Avramova V (2022) Natural alleles of the abscisic acid catabolism gene ZmAbh4 modulate water use efficiency and carbon isotope discrimination in maize. The Plant cell (in press) doi:10.1093/plcell/koac200.

Coupel-Ledru A, Lebon E, Goutouly J-P, Christophe A, Gago P, Brault C, This P, Doligez A, Simonneau T (2022) Chapter 4 - Phenotyping for drought tolerance in grapevine populations: the challenge of heterogeneous field conditions. In JM Costa, S Catarino, JM Escalona, P Comuzzo, eds, Improving Sustainable Viticulture and Winemaking Practices. Academic Press, pp 65-83.

Coupel-Ledru A, Pallas B, Delalande M, Segura V, Guitton B, Muranty H, Durel C-E, Regnard J-L, Costes E (2022) Tree architecture, light interception and water-use related traits are controlled by different genomic regions in an apple tree core collection. New Phytologist 234: 209-226. doi:10.1111/nph.17960.

Ding L, Milhiet T, Parent B, Meziane A, Tardieu F, Chaumont F (2022) The plasma membrane aquaporin ZmPIP2;5 enhances the sensitivity of stomatal closure to water deficit. Plant, Cell & Environment 45: 1146-1156. doi:10.1111/pce.14276.

Dueri S, Brown H, Asseng S, Ewert F, Webber H, George M, Craigie R, Guarin JR, Pequeno DNL, Stella T, Ahmed M, Alderman PD, Basso B, Berger AG, Mujica GB, Cammarano D, Chen Y, Dumont B, Rezaei EE, Fereres E, Ferrise R, Gaiser T, Gao Y, Garcia-Vila M, Gayler S, Hochman Z, Hoogenboom G, Kersebaum KC, Nendel C, Olesen JE, Padovan G, Palosuo T, Priesack E, Pullens JWM, Rodriguez A, Rotter RP, Ramos MR, Semenov MA, Senapati N, Siebert S, Srivastava AK, Stockle C, Supit I, Tao F, Thorburn P, Wang E, Weber TKD, Xiao L, Zhao C, Zhao J, Zhao Z, Zhu Y, Martre P (2022) Simulation of winter wheat response to variable sowing dates and densities in a high-yielding environment. Journal of Experimental Botany 73: 5715–5729. doi:10.1093/jxb/erac221.

Estarague A, Vasseur F, Sartori K, Bastias CC, Cornet D, Rouan L, Beurier G, Exposito-Alonso M, Herbette S, Bresson J, Vile D, Violle C (2022) Into the range: a latitudinal gradient or a center-margins differentiation of ecological strategies in Arabidopsis thaliana? Annals of Botany 129: 343-356. doi:10.1093/aob/mcab149.

Eyland D, Luchaire N, Cabrera-Bosquet L, Parent B, Janssens SB, Swennen R, Welcker C, Tardieu F, Carpentier S (2022) High-throughput phenotyping reveals differential transpiration behavior within the banana wild relatives highlighting diversity in drought tolerance. Plant, Cell & Environment 45: 1647-1663. doi:10.1111/pce.14310.

Fang L, Yin X, van der Putten PEL, Martre P, Struik PC (2022) Drought exerts a greater influence than growth temperature on the temperature response of leaf day respiration in wheat (Triticum aestivum). Plant, Cell & Environment 45: 2062-2077. doi:10.1111/pce.14324.

Guedon Y, Caraglio Y, Granier C, Lauri P-E, Muller B (2022) Identifying Developmental Patterns in Structured Plant Phenotyping Data. In M Lucas, ed, Plant Systems Biology. Methods in molecular biology, Vol 2395. Humana, New York, USA, pp 199-225.

Morisse M, Wells DM, Millet EJ, Lillemo M, Fahrner S, Cellini F, Lootens P, Muller O, Herrera JM, Bentley AR, Janni M (2022) A European perspective on opportunities and demands for field-based crop phenotyping. Field Crops Research 276: 108371. doi:10.1016/j.fcr.2021.108371.

Nieves-Cordones M, Azeem F, Long Y, Boeglin M, Duby G, Mouline K, Hosy E, Vavasseur A, Cherel I, Simonneau T, Gaymard F, Leung J, Gaillard I, Thibaud J-B, Very A-A, Boudaoud A, Sentenac H (2022) Non-autonomous stomatal control by pavement cell turgor via the K+ channel subunit AtKC1. The Plant Cell 34: 2019-2037. doi:10.1093/plcell/koac038.

Nowak J, Faure N, Glorieux C, Vile D, Pauwels M, Frérot H (2022) Sublethal effects of metal toxicity and the measure of plant fitness in ecotoxicological experiments. Environmental Pollution 304: 119138. doi:10.1016/j.envpol.2022.119138.

Oury V, Leroux T, Turc O, Chapuis R, Palaffre C, Tardieu F, Prado SA, Welcker C, Lacube S (2022) Earbox, an open tool for high-throughput measurement of the spatial organization of maize ears and inference of novel traits. Plant Methods 18: 96. doi:10.1186/s13007-022-00925-8.

Panozzo A, Huang H-Y, Bernazeau B, Meunier F, Turc O, Duponnois R, Prin Y, Vamerali T, Desclaux D (2022) Impact of Olive Trees on the Microclimatic and Edaphic Environment of the Understorey Durum Wheat in an Alley Orchard of the Mediterranean Area. Agronomy 12: 527. doi:10.3390/agronomy12020527.

Pantaleoni-Reluy N, Baghdadi N, Simonneau T, Bazzi H, El Hajj M, Pret V, Amin G, Daret E (2022) Can we detect the damage of a heatwave on vineyards using Sentinel-2 optical remote sensing data? OENO One 56: 145-159. doi:10.20870/oeno-one.2022.56.1.4632.

Pellegrino A, Blackmore D, Clingeleffer P, Walker R (2022) Comparison of methods for determining budburst date in grapevine. OENO One 56: 73-86. doi:10.20870/oeno-one.2022.56.1.4751.

Perez-Valencia DM, Rodriguez-Alvarez MX, Boer MP, Kronenberg L, Hund A, Cabrera-Bosquet L, Millet EJ, van Eeuwijk FA (2022) A two-stage approach for the spatio-temporal analysis of high-throughput phenotyping data. Scientific reports 12: 3177. doi:10.1038/s41598-022-06935-9.

Regnard J-L, Coupel-Ledru A (2022) Chapitre 8 – Comprendre et limiter les effets du déficit hydrique chez les espèces fruitières. In J-M Legave, ed, Les productions fruitières à l’heure du changement climatique. Risques et opportunités en régions tempérées. Éditions Quae, Paris, France, pp 259-288.

Ryckewaert M, Héran D, Simonneau T, Abdelghafour F, Boulord R, Saurin N, Moura D, Mas Garcia S, Bendoula R (2022) Physiological variable predictions using VIS–NIR spectroscopy for water stress detection on grapevine: Interest in combining climate data using multiblock method. Computers and Electronics in Agriculture 197: 106973. doi:10.1016/j.compag.2022.106973.

Saint Cast C, Lobet G, Cabrera-Bosquet L, Couvreur V, Pradal C, Tardieu F, Draye X (2022) Connecting plant phenotyping and modelling communities: lessons from science mapping and operational perspectives. in silico Plants 4: diac005. doi:10.1093/insilicoplants/diac005.

Sartori K, Violle C, Vile D, Vasseur F, Villemereuil P, Bresson J, Gillespie L, Fletcher LR, Sack L, Kazakou E (2022) Do leaf nitrogen resorption dynamics align with the slow-fast continuum? A test at the intraspecific level. Functional Ecology 36: 1315-1328. doi:10.1111/1365-2435.14029.

Senapati N, Semenov MA, Halford NG, Hawkesford MJ, Asseng S, Cooper M, Ewert F, van Ittersum MK, Martre P, Olesen JE, Reynolds M, Rotter RP, Webber H (2022) Global wheat production could benefit from closing the genetic yield gap. Nature Food 3: 532-541. doi:10.1038/s43016-022-00540-9.

Sun P, Isner J-C, Coupel-Ledru A, Zhang Q, Pridgeon AJ, He Y, Menguer PK, Miller AJ, Sanders D, McGrath SP, Noothong F, Liang Y-K, Hetherington AM (2022) Countering elevated CO2 induced Fe and Zn reduction in Arabidopsis seeds. The New phytologist 235:1796-1806. doi:10.1111/nph.18290.

Tardieu F (2022) Different avenues for progress apply to drought tolerance, water use efficiency and yield in dry areas. Current opinion in biotechnology 73: 128-134. doi:10.1016/j.copbio.2021.07.019.

Vasseur F, Cornet D, Beurier G, Messier J, Rouan L, Bresson J, Ecarnot M, Stahl M, Heumos S, Gérard M, Reijnen H, Tillard P, Lacombe B, Emanuel A, Floret J, Estarague A, Przybylska S, Sartori K, Gillespie LM, Baron E, Kazakou E, Vile D, Violle C (2022) A Perspective on Plant Phenomics: Coupling Deep Learning and Near-Infrared Spectroscopy. Frontiers in Plant Science 13: 836488. doi:10.3389/fpls.2022.836488.

Vasseur F, Westgeest AJ, Vile D, Violle C (2022) Solving the grand challenge of phenotypic integration: allometry across scales. Genetica doi:10.1007/s10709-022-00158-6.

Welcker C, Abusamra Spencer N, Turc O, Granato I, Chapuis R, Madur D, Beauchene K, Gouesnard B, Draye X, Palaffre C, Lorgeou J, Melkior S, Guillaume C, Presterl T, Murigneux A, Wisser RJ, Millet EJ, van Eeuwijk F, Charcosset A, Tardieu F (2022) Physiological adaptive traits are a potential allele reservoir for maize genetic progress under challenging conditions. Nature Communications 13: 3225. doi:10.1038/s41467-022-30872-w.

Weldekidan T, Manching H, Choquette N, Leon N, Flint‐Garcia S, Holland J, Lauter N, Murray S, Xu W, Goodman M, Wisser R (2021) Registration of tropical populations of maize selected in parallel for early flowering time across the United States. Journal of Plant Registrations 16:100-108. doi:10.1002/plr2.20181.


Antalick G, Šuklje K, Blackman JW, Schmidtke LM, Deloire A (2021) Performing sequential harvests based on berry sugar accumulation (mg/berry) to obtain specific wine sensory profiles. OENO One 55: 131-146. doi:10.20870/oeno-one.2021.55.2.4527.

Barczi J-F, Beroueg A, Buck-Sorlin G, Couvreur V, Danjon F, Delory BM, Doussan C, De Swaef T, Draye X, Drouet J-L, Dupuy L, Garre S, Gérard F, Heymans A, Hinsinger P, Javaux M, Koch A, Landl M, Lecompte F, Daniel L, Lobet G, Lynch J, Martre P, Meredieu C, Meunier F, Mollier A, Muller B, Nguyen C, Picon-Cochard C, Postma JA, Pradal C, REES F, Richard-Molard C, Roose T, Saint-Cast C, Schnepf A, Thaler P, Vanderborght J, Wu L, Zhou X (2021) Loïc Pagès, founding scientist in root ecology and modelling. in silico Plants 3: diab035. doi:10.1093/insilicoplants/diab035.

Barillot R, De Swaef T, Combes D, Durand J-L, Escobar-Gutierrez AJ, Martre P, Perrot C, Roy E, Frak E (2021) Leaf elongation response to blue light is mediated by stomatal-induced variations in plant transpiration in Festuca arundinacea. Journal of Experimental Botany 72: 2642-2656. doi:10.1093/jxb/eraa585.

Bengoa Luoni SA, Cenci A, Moschen S, Nicosia S, Radonic LM, Sabio y Garcia JV, Langlade NB, Vile D, Vazquez Rovere C, Fernandez P (2021) Genome-wide and comparative phylogenetic analysis of senescence-associated NAC transcription factors in sunflower (Helianthus annuus). BMC Genomics 22: 893. doi:10.1186/s12864-021-08199-5.

Berges SE, Vile D, Yvon M, Masclef D, Dauzat M, van Munster M (2021) Water deficit changes the relationships between epidemiological traits of Cauliflower mosaic virus across diverse Arabidopsis thaliana accessions. Scientific reports 11: 24103. doi:10.1038/s41598-021-03462-x.

Blanc E, Barbillon P, Fournier C, Lecarpentier C, Pradal C, Enjalbert J (2021) Functional–Structural Plant Modeling Highlights How Diversity in Leaf Dimensions and Tillering Capability Could Promote the Efficiency of Wheat Cultivar Mixtures. Frontiers in Plant Science 12: 734056. doi:10.3389/fpls.2021.734056.

Brault C, Doligez A, Le Cunff L, Coupel-Ledru A, Simonneau T, Chiquet J, This P, Flutre T (2021) Harnessing multivariate, penalized regression methods for genomic prediction and QTL detection of drought-related traits in grapevine. G3 Genes|Genomes|Genetics 11: jkab248. doi:10.1093/g3journal/jkab248.

Calvo‐Polanco M, Ribeyre Z, Dauzat M, Reyt G, Hidalgo‐Shrestha C, Diehl P, Frenger M, Simonneau T, Muller B, Salt D, Franke R, Maurel C, Boursiac Y (2021) Physiological roles of Casparian strips and suberin in the transport of water and solutes. New Phytologist 232: 2295-2307. doi:10.1111/nph.17765.

Corrales DC, Alletto L, Barone S, Constantin J, Lurette A, Madrid A, Robin M-H, Maury P, Moulin C-H, Ollat N, Parent B, Stark F, Prevot L, Raynal H, Tardieu F, Touzard J-M, van Munster M, Vile D, Volaire F, Welcker C, Willaume M (2021) Agrosystèmes. In S Barone, J Fabre, J Hidalgo, D Salas y Melia, G Simonet, eds, Cahier Régional Occitanie sur les Changements Climatiques, Vol 1. Réseau d’expertise sur les changements climatiques en Occitanie, Toulouse, France, pp 165-191.

Deloire A, Pellegrino A (2021) Review of vine water deficit. What levers for the vineyard in the short and medium term? IVES Technical Reviews vine and wine 2021: 4842. doi:10.20870/ives-tr.2021.4842 

Deloire A, Rogiers S, Šuklje K, Antalick G, Zeyu X, Pellegrino A (2021) Grapevine berry shrivelling, water loss and cell death: an increasing challenge for growers in the context of climate change. IVES Technical Reviews vine and wine 2021:4615. doi:10.20870/ives-tr.2021.4615.

Eyland D, Breton C, Sardos J, Kallow S, Panis B, Swennen R, Paofa J, Tardieu F, Welcker C, Janssens SB, Carpentier SC (2021) Filling the gaps in gene banks: Collecting, characterizing, and phenotyping wild banana relatives of Papua New Guinea. Crop Science 61: 137-149. doi:10.1002/csc2.20320.

Fagny M, Kuijjer ML, Stam M, Joets J, Turc O, Rozière J, Pateyron S, Venon A, Vitte C (2021) Identification of Key Tissue-Specific, Biological Processes by Integrating Enhancer Information in Maize Gene Regulatory Networks. Frontiers in Genetics 11: 606285. doi:10.3389/fgene.2020.606285.

Guiguitant J, Marrou H, Vile D, Sinclair T, Pradhan D, Ramirez M, Ghanem ME (2021) An exploration of the variability of physiological responses to soil drying in relation with C/N balance across three species of the under‐utilized genus Vigna. Physiologia Plantarum 172: 477-486. doi:10.1111/ppl.13224.

Guiguitant J, Vile D, Marrou H (2021) Trait Diversity of Pulse Species Predicts Agroecosystem Properties Trade-Offs. Frontiers in Plant Science 12: 636915. doi:10.3389/fpls.2021.636915.

Heidsieck G, de Oliveira D, Pacitti E, Pradal C, Tardieu F, Valduriez P (2021) Cache-aware scheduling of scientific workflows in a multisite cloud. Future Generation Computer Systems-the International Journal of Escience 122: 172-186. doi:10.1016/j.future.2021.03.012.

Hilty J, Muller B, Florent P, Leuzinger S (2021) Plant growth: the What, the How, and the Why. New Phytologist 232: 25-41. doi:10.1111/nph.17610.

Iocco-Corena P, Chaïb J, Torregrosa L, Mackenzie D, Thomas M, R, Smith H, M (2021) VviPLATZ1 is a major factor that controls female flower morphology determination in grapevine. Nature Communications 12:6995. doi:1210.1038/s41467-021-27259-8.

Kholová J, Urban MO, Cock J, Arcos J, Arnaud E, Aytekin D, Azevedo V, Barnes A, P, Ceccarelli S, Chavarriaga P, Cobb J, N, Connor D, Cooper M, Craufurd P, Debouck D, Fungo R, GRANDO S, Hammer G, L, Jara C, E, Messina C, Mosquera G, Nchanji E, Ng EH, Prager S, Sankaran S, Selvaraj M, Tardieu F, Thornton P, Valdes-Gutierrez S, P, van Etten J, Wenzl P, Xu Y (2021) In pursuit of a better world: crop improvement and the CGIAR. Journal of Experimental Botany 72: 5158-5179. doi:10.1093/jxb/erab226.

Knowling MJ, Bennett B, Ostendorf B, Westra S, Walker RR, Pellegrino A, Edwards EJ, Collins C, Pagay V, Grigg D (2021) Bridging the gap between data and decisions: A review of process-based models for viticulture. Agricultural Systems 193: 103209. doi:10.1016/j.agsy.2021.103209.

Leveau S, Parent B, Zaka S, Martre P (2021) Sensitivities to temperature and evaporative demand in wheat relatives. Journal of Experimental Botany 72: 7580-7593. doi:10.1093/jxb/erab431

Liu S, Baret F, Abichou M, Manceau L, Andrieu B, Weiss M, Martre P (2021) Importance of the description of light interception in crop growth models. Plant Physiology 186: 977-997. doi:10.1093/plphys/kiab113.

Mariani RO, Cadotte MW, Isaac ME, Vile D, Violle C, Martin AR (2021) National-scale changes in crop diversity through the Anthropocene. Scientific reports 11: 20361. doi:10.1038/s41598-021-99728-5.

Midingoyi CA, Pradal C, Enders A, Fumagalli D, Raynal H, Donatelli M, Athanasiadis IN, Porter C, Hoogenboom G, Holzworth D, Garcia F, Thorburn P, Martre P (2021) Crop2ML: An open-source multi-language modeling framework for the exchange and reuse of crop model components. Environmental Modelling & Software 142: 105055. doi:

Noia RD, Martre P, Finger R, van der Velde M, Ben-Ari T, Ewert F, Webber H, Ruane AC, Asseng S (2021) Extreme lows of wheat production in Brazil. Environmental Research Letters 16: 104025. doi:10.1088/1748-9326/ac26f3.

Pellegrino A, Deloire A (2021) Calcul des besoins en eau d’un vignoble à partir de l’évapotranspiration de référence et raisonnement associé. Revue des Oenologues et des Techniques Vitivinicoles et Oenologiques 181 S: 48-49.

Simonneau T, Prieto J, Coupel-Ledru A, Westgeest A, J., Tiffon-Terrade B, Boulord R, Ojeda H, Saurin N, Pantin F, Christophe A, Pellegrino A, Deloire A, Torregrosa L, Doligez A, This P (2021) Des leviers pour économiser l’eau dans les vignobles. La revue des Œnologues 181: 19-23.

Stella T, Webber H, Olesen JE, Ruane AC, Fronzek S, Bregaglio S, Mamidanna S, Bindi M, Collins B, Faye B, Ferrise R, Fodor N, Gabaldon-Leal C, Jabloun M, Kersebaum KC, Lizaso JI, Lorite IJ, Manceau L, Martre P, Nendel C, Rodriguez A, Ruiz-Ramos M, Semenov MA, Stratonovitch P, Ewert F (2021) Methodology to assess the changing risk of yield failure due to heat and drought stress under climate change. Environmental Research Letters 16: 104033. doi:10.1088/1748-9326/ac2196.

Tardieu F, Granato ISC, Van Oosterom EJ, Parent B, Hammer GL (2021) Are crop and detailed physiological models equally ‘mechanistic’ for predicting the genetic variability of whole-plant behaviour? The nexus between mechanisms and adaptive strategies. in silico Plants 2: diaa011. doi:10.1093/insilicoplants/diaa011.

Torregrosa L, Carbonneau A, Kelner J-J (2021) The shoot system architecture of Vitis vinifera ssp. sativa. Scientia Horticulturae 288: 110404. doi:10.1016/j.scienta.2021.110404.

Vargas-Rojas LF (2021) Ontological Formalisation of Mathematical Equations for Phenomic Data Exploitation. In V Ruben, D Anastasia, H Aidan, dA Claudia, T Ilaria, B Arne, M Simon, O Femke, T Riccardo, A Mehwish, eds, The Semantic Web: ESWC 2021 Satellite Events, Vol 12739. Springer International Publishing, Cham, pp 176-185.

Varshney RK, Barmukh R, Roorkiwal M, Qi Y, Kholova J, Tuberosa R, Reynolds MP, Tardieu F, Siddique KHM (2021) Breeding custom-designed crops for improved drought adaptation. Advanced Genetics (in press): e10052. doi:10.1002/ggn2.10052.

Vrignon-Brenas S, Fontez B, Bisson A, Rolland G, Chopard J, Fumey D, Metay A, Pellegrino A (2021) Combining pluriannual dynamics and Bayesian approach to analyze grapevine growth and storage as a function of nitrogen supply. Journal of Experimental Botany 73: 1385-1401. doi:10.1093/jxb/erab469.

Wilhelm L, Pellegrino A, Ojeda H, Torregrosa L (2021) Caractériser la tolérance à la sécheresse des nouvelles variétés résistantes aux maladies fongiques. Complexité des processus physiologiques sous-jacents à l’adaptation aux contraintes hydriques. Revue des Oenologues et des Techniques Vitivinicoles et Oenologiques 181 S: 31-34.

Wisser RJ, Oppenheim SJ, Ernest EG, Mhora TT, Dumas MD, Gregory NF, Evans TA, Donofrio NM (2021) Genome assembly of a Mesoamerican derived variety of lima bean: a foundational cultivar in the Mid-Atlantic USA. G3 Genes|Genomes|Genetics 11: jkab207. doi:10.1093/g3journal/jkab207.

Xyrafis EG, Deloire A, Petoumenou D, Paraskevopoulos I, Biniari K (2021) The unique and extreme vineyards of Santorini Island (Cyclades). IVES Technical Reviews vine and wine 2021:4848. doi:10.20870/ives-tr.2021.4848.


Bergès SE, Vasseur F, Bediée A, Rolland G, Masclef D, Dauzat M, van Munster M, Vile D (2020) Natural variation of Arabidopsis thaliana responses to Cauliflower mosaic virus infection upon water deficit. PLOS Pathogens 16: e1008557. doi:10.1371/journal.ppat.1008557.

Blein-Nicolas M, Negro SS, Balliau T, Welcker C, Cabrera-Bosquet L, Nicolas SD, Charcosset A, Zivy M (2020) A systems genetics approach reveals environment-dependent associations between SNPs, protein coexpression, and drought-related traits in maize. Genome Research 30: 1593-1604. doi:10.1101/gr.255224.119.

Bonnot T, Martre P, Hatte V, Dardevet M, Leroy P, Benard C, Falagan N, Martin-Magniette ML, Deborde C, Moing A, Gibon Y, Pailloux M, Bancel E, Ravel C (2020) Omics Data Reveal Putative Regulators of Einkorn Grain Protein Composition under Sulfur Deficiency. Plant Physiology 183: 501-516. doi:10.1104/pp.19.00842.

Carbonneau A, Torregrosa L, Deloire A, Pellegrino A, Pantin F, Romieu C, Jaillard B, Metay A, Ojeda H, Abbal P (2020) Traité de la vigne : physiologie, terroir, culture. Dunod, Paris, France, 712 p. ISBN:9782100798575.

Castelletti S, Coupel-Ledru A, Granato I, Palaffre C, Cabrera-Bosquet L, Tonelli C, Nicolas SD, Tardieu F, Welcker C, Conti L (2020) Maize adaptation across temperate climates was obtained via expression of two florigen genes. Plos Genetics 16: e1008882. doi:10.1371/journal.pgen.1008882.

Ding L, Milhiet T, Couvreur V, Nelissen H, Meziane A, Parent B, Aesaert S, Van Lijsebettens M, Inzé D, Tardieu F, Draye X, Chaumont F (2020) Modification of the expression of the aquaporin ZmPIP2;5 affects water relations and plant growth. Plant Physiology 182: 2154-2165. doi:10.1104/pp.19.01183.

Dingkuhn M, Luquet D, Fabre D, Muller B, Yin X, Paul MJ (2020) The case for improving crop carbon sink strength or plasticity for a CO2-rich future. Current Opinion in Plant Biology 56: 259-272. doi:10.1016/j.pbi.2020.05.012.

Gauthier M, Barillot R, Schneider A, Chambon C, Fournier C, Pradal C, Robert C, Andrieu B (2020) A functional structural model of grass development based on metabolic regulations and coordination rules. Journal of Experimental Botany 71: 5454-5468. doi:10.1093/jxb/eraa276.

Gnanguenon Guesse G, Loisel P, Fontez B, Simonneau T, Hilgert N (2020) An exploratory penalized regression to identify combined effects of functional agri-environmental variables. 30th International Biometric Conference ( IBC2020 ), Seoul, South Korea

Guarin JR, Asseng S, Martre P, Bliznyuk N (2020) Testing a crop model with extreme low yields from historical district records. Field Crops Research 249: 107629. doi:10.1016/j.fcr.2018.03.006.

Guiguitant J, Vile D, Ghanem ME, Wery J, Marrou H (2020) Evaluation of pulse crops’ functional diversity supporting food production. Scientific reports 10: 3416. doi:10.1038/s41598-020-60166-4.

Hanemian M, Vasseur F, Marchadier E, Gilbault E, Bresson J, Gy I, Violle C, Loudet O (2020) Natural variation at FLM splicing has pleiotropic effects modulating ecological strategies in Arabidopsis thaliana. Nature Communications 11: 4140. doi:10.1038/s41467-020-17896-w.

Hoogenboom G, Justes E, Pradal C, Launay M, Asseng S, Ewert F, Martre P (2020) iCROPM 2020: Crop Modeling for the Future. Journal of Agricultural Science 158: 791-793. doi:10.1017/s0021859621000538.

Lacube S, Manceau L, Welcker C, Millet E, Gouesnard B, Palaffre C, Ribaut JM, Hammer G, Parent B, Tardieu F (2020) Simulating the effect of flowering time on maize individual leaf area in contrasting environmental scenarios. Journal of Experimental Botany 71: 5577-5588. doi:10.1093/jxb/eraa278.

Mahaut L, Cheptou P-O, Fried G, Munoz F, Storkey J, Vasseur F, Violle C, Bretagnolle F (2020) Weeds: Against the Rules? Trends in Plant Science 25: 1107-1116. doi:10.1016/j.tplants.2020.05.013.

Midingoyi CA, Pradal C, Athanasiadis I, N., Donatelli M, Enders A, Fumagalli D, Garcia F, Holzworth D, Hoogenboom G, Porter C, Raynal H, Thorburn P, Martre P, Martres (2020) Reuse of process-based models: automatic transformation into many programming languages and simulation platforms. In Silico Plants 2:diaa007. doi:10.1093/insilicoplants/diaa007.

Nagahatenna DSK, Parent B, Edwards EJ, Langridge P, Whitford R (2020) Barley Plants Overexpressing Ferrochelatases (HvFC1 and HvFC2) Show Improved Photosynthetic Rates and Have Reduced Photo-Oxidative Damage under Drought Stress than Non-Transgenic Controls. Agronomy 10: 1351. doi:10.3390/agronomy10091351.

Padovan G, Martre P, Semenov M, Masoni A, Bregaglio S, Ventrella D, Lorite I, Santos C, Bindi M, Ferrise R, Dibari C (2020) Understanding effects of genotype × environment × sowing window interactions for durum wheat in the Mediterranean basin. Field Crops Research 259: 107969. doi:10.1016/j.fcr.2020.107969.

Papoutsoglou EA, Faria D, Arend D, Arnaud E, Athanasiadis IN, Chaves I, Coppens F, Cornut G, Costa BV, Cwiek-Kupczynska H, Droesbeke B, Finkers R, Gruden K, Junker A, King GJ, Krajewski P, Lange M, Laporte M-A, Michotey C, Oppermann M, Ostler R, Poorter H, Rami Rez-Gonzalez R, Ramsak Z, Reif JC, Rocca-Serra P, Sansone S-A, Scholz U, Tardieu F, Uauy C, Usadel B, Visser RGF, Weise S, Kersey PJ, Miguel CM, Adam-Blondon A-F, Pommier C (2020) Enabling reusability of plant phenomic datasets with MIAPPE 1.1. New Phytologist 227: 260-273. doi:10.1111/nph.16544.

Prieto JA, Louarn G, Perez Pena J, Ojeda H, Simonneau T, Lebon E (2020) A Functional-Structural Plant Model that Simulates Whole- Canopy Gas-Exchange of Grapevine Plants (Vitis Vinifera L.) Under Different Training Systems. Annals of Botany 126: 647-660. doi:10.1093/aob/mcz203.

Rolland G (2020) Choix d’une méthode d’extraction et de purification pour le dosage des sucres solubles et de l’amidon dans les tissus ligneux de la vigne. Le Cahier des Techniques INRAE 100: Art3.

Spor A, Roucou A, Mounier A, Bru D, Breuil M-C, Fort F, Vile D, Roumet P, Philippot L, Violle C (2020) Domestication-driven changes in plant traits associated with changes in the assembly of the rhizosphere microbiota in tetraploid wheat. Scientific reports 10: 12234. doi:10.1038/s41598-020-69175-9.

Tao F, Palosuo T, Rötter RP, Díaz-Ambrona CGH, Inés Mínguez M, Semenov MA, Kersebaum KC, Cammarano D, Specka X, Nendel C, Srivastava AK, Ewert F, Padovan G, Ferrise R, Martre P, Rodríguez L, Ruiz-Ramos M, Gaiser T, Höhn JG, Salo T, Dibari C, Schulman AH (2020) Why do crop models diverge substantially in climate impact projections? A comprehensive analysis based on eight barley crop models. Agricultural and Forest Meteorology 281: 107851. doi:10.1016/j.agrformet.2019.107851.

Tardieu F (2020) Educated big data to study sensitivity to drought. Nature Food 1: 669-670. doi:10.1038/s43016-020-00187-4.

Webber H, Cooke DK, Ewert F, Olesen JE, Fronzek S, Ruane A, C, Martre P, Collins B, Bindi M, Ferrise R, Fodor N, Gabaldón-Leal C, Gaiser T, Jabloun M, Kersebaum K-C, Lizaso JI, Lorite IJ, Manceau L, Moriondo M, Nendel C, Rodríguez A, Ruiz-Ramos M, Semenov M, A, Stella T, Trombi G, Stratonovitch P (2020) Pan-European multi-crop model ensemble simulations of wheat and grain maize under climate change scenarios. Open Data Journal for Agricultural Research 6: 21-27. doi:10.18174/odjar.v6i0.16326.


Albasha R, Fournier C, Pradal C, Chelle M, Prieto JA, Louarn G, Simonneau T, Lebon E (2019) HydroShoot: a functional-structural plant model for simulating hydraulic structure, gas and energy exchange dynamics of complex plant canopies under water deficit - application to grapevine (Vitis vinifera L.). in silico Plants: diz007. doi:10.1093/insilicoplants/diz007.

Alcantara Novelli Dias F, Torregrosa L, Luchaire N, Houel C, Pellegrino A (2019) The microvine, a model to study the effect of temperature on grapevine latent bud development and fruitfulness. OENO One 53: 393-407. doi:10.20870/oeno-one.2019.53.3.2313.

Alvarez Prado S, Sanchez I, Cabrera Bosquet L, Grau A, Welcker C, Tardieu F, Hilgert N (2019) To clean or not to clean phenotypic datasets for outlier plants in genetic analyses? Journal of Experimental Botany 70: 3693-3698. doi:10.1093/jxb/erz191.

Asseng S, Martre P, Ewert F, Dreccer MF, Beres BL, Reynolds M, Braun H-J, Langridge P, Le Gouis J, Salse J, Baenziger PS (2019) Model-Driven Multidisciplinary Global Research to Meet Future Needs: The Case for "Improving Radiation Use Efficiency to Increase Yield". Crop Science 59: 843-849. doi:10.2135/cropsci2018.09.0562.

Asseng S, Martre P, Maiorano A, Rötter RP, O'Leary GJ, Fitzgerald GJ, Girousse C, Motzo R, Babar MA, Reynolds MP, Kheir AMS, Thorburn PJ, Waha K, Ruane AC, Aggarwal PK, Ahmed M, Balkovič J, Basso B, Biernath C, Bindi M, Cammarano D, Challinor AJ, De Sanctis G, Dumont B, Rezaei EE, Fereres E, Ferrise R, Garcia-Vila M, Gayler S, Gao Y, Horan H, Hoogenboom G, Izaurralde RC, Jabloun M, Curtis DJ, Kassie BT, Kersebaum K-C, Klein C, Koehler A-K, Liu B, Minoli S, San Martin MM, Muller C, Kumar SN, Nendel C, Olesen JE, Palosuo T, Porter J, Priesack E, Ripoche D, Semenov MA, Stöckle C, Stratonovitch P, Streck T, Supit I, Tao F, Van der Velde M, Wallach D, Wang E, Webber H, Wolf J, Xiao L, Zhang Z, Zhao Z, Zhuo Y, Ewert F (2019) Climate change impact and adaptation for wheat protein. Global Change Biology 25: 155-173. doi:10.1111/gcb.14481.

Avramova V, Meziane A, Bauer E, Blankenagel S, Eggels S, Gresset S, Grill E, Niculaes C, Ouzunova M, Poppenberger B, Presterl T, Rozhon W, Welcker C, Yang Z, Tardieu F, Schön C-C (2019) Carbon isotope composition, water use efficiency, and drought sensitivity are controlled by a common genomic segment in maize. Theoretical and Applied Genetics 132: 53-63. doi:10.1007/s00122-018-3193-4.

Bancel E, Bonnot T, Davanture M, Alvarez D, Zivy M, Martre P, Déjean S, Ravel C (2019) Proteomic Data Integration Highlights Central Actors Involved in Einkorn (Triticum monococcum ssp. monococcum) Grain Filling in Relation to Grain Storage Protein Composition. Frontiers in Plant Science 10: 832. doi:10.3389/fpls.2019.00832.

Barillot R, Chambon C, Fournier C, Combes D, Pradal C, Andrieu B (2019) Investigation of complex canopies with a functional–structural plant model as exemplified by leaf inclination effect on the functioning of pure and mixed stands of wheat during grain filling. Annals of Botany 123: 727-742. doi:10.1093/aob/mcy208.

Baumont M, Parent B, Manceau L, Brown H, Driever SM, Muller B, Martre P (2019) Experimental and modeling evidence of carbon limitation of leaf appearance rate for spring and winter wheat. Journal of Experimental Botany 70: 2449-2462. doi:10.1093/jxb/erz012.

Boudet J, Merlino M, Plessis A, Gaudin J-C, Dardevet M, Perrochon S, Alvarez D, Risacher T, Martre P, Ravel C (2019) The bZIP transcription factor SPA Heterodimerizing Protein represses glutenin synthesis in Triticum aestivum. Plant Journal 97: 858-871. doi:10.1111/tpj.14163.

Chen TW, Cabrera Bosquet L, Alvarez Prado S, Perez R, Artzet S, Pradal C, Coupel-Ledru A, Fournier C, Tardieu F (2019) Genetic and environmental dissection of biomass accumulation in multi-genotype maize canopies. Journal of Experimental Botany 70: 2523-2534. doi:10.1093/jxb/ery309.

Deloire A, Pellegrino A, Ristic R (2019) Spatial distribution of berry fresh mass, seed number and sugar concentration on grapevine clusters of Shiraz. Discussion of potential consequences for sampling to monitor vineyard ripening. Wine and Viticulture Journal 34(2): 42-47.

Garnier E, Vile D, Roumet C, Lavorel S, Grigulis K, Navas M-L, Lloret F (2019) Inter- and intra-specific trait shifts among sites differing in drought conditions at the north western edge of the Mediterranean Region. Flora 254: 147-160. doi:10.1016/j.flora.2018.07.009.

Kazakou E, Vasseur F, Sartori K, Baron E, Rowe N, Vile D (2019) Secondary metabolites have more influence than morpho‐physiological traits on litter decomposability across genotypes of Arabidopsis thaliana. New Phytologist 224: 1532-1543. doi:10.1111/nph.15983.

Koch G, Rolland G, Dauzat M, Bediee A, Baldazzi V, Bertin N, Guédon Y, Granier C (2019) Leaf Production and Expansion: A Generalized Response to Drought Stresses from Cells to Whole Leaf Biomass—A Case Study in the Tomato Compound Leaf. Plants 8: 409. doi:10.3390/plants8100409.

Liu B, Martre P, Ewert F, Porter J, Challinor AJ, Müller C, Ruane AC, Waha K, Thorburn PJ, Aggarwal PK, Ahmed M, Balkovič J, Basso B, Biernath C, Bindi M, Cammarano D, De Sanctis G, Dumont B, Espadafor M, Eyshi Rezaei E, Ferrise R, Garcia‐Vila M, Gayler S, Gao Y, Horan H, Hoogenboom G, Izaurralde RC, Jones CD, Kassie BT, Kersebaum KC, Klein C, Koehler AK, Maiorano A, Minoli S, Montesino San Martin M, Kumar SN, Nendel C, O'Leary GJ, Palosuo T, Priesack E, Ripoche D, Rötter RP, Semenov MA, Stöckle C, Streck T, Supit I, Tao F, Van der Velde M, Wallach D, Wang E, Webber H, Wolf J, Xiao L, Zhang Z, Zhao Z, Zhu Y, Asseng S (2019) Global wheat production with 1.5 and 2.0°C above pre‐industrial warming. Global Change Biology 25: 1428-1444. doi:10.1111/gcb.14542.

Liu S, Martre P, Buis S, Abichou M, Andrieu B, Baret F (2019) Estimation of plant and canopy architectural traits using the D3P Digital Plant Phenotyping Platform. Plant Physiology 181: 881-890. doi:10.1104/pp.19.00554.

Martin AR, Cadotte MW, Isaac ME, Milla R, Vile D, Violle C (2019) Regional and global shifts in crop diversity through the Anthropocene. PLoS ONE 14: e0209788. doi:10.1371/journal.pone.0209788.

Messina CD, Hammer GL, McLean G, Cooper M, van Oosterom EJ, Tardieu F, Chapman SC, Doherty A, Gho C (2019) On the dynamic determinants of reproductive failure under drought in maize. in silico Plants 110.1093/insilicoplants/diz003.

Millet E, Kruijer W, Coupel-Ledru A, Alvarez Prado S, Cabrera Bosquet L, Lacube S, Charcosset A, Welcker C, van Eeuwijk F, Tardieu F (2019) Genomic prediction of maize yield across European environmental conditions. Nature Genetics 51: 952-956. doi:10.1038/s41588-019-0414-y.

Molero G, Tcherkez G, Roca R, Mauve C, Cabrera-Bosquet L, Araus JL, Nogués S, Aranjuelo I (2019) Do metabolic changes underpin physiological responses to water limitation in alfalfa (Medicago sativa) plants during a regrowth period? Agricultural Water Management 212: 1-11. doi:10.1016/j.agwat.2018.08.021.

Muller B, Guédon Y, Passot S, Lobet G, Nacry P, Pagès L, Wissuwa M, Draye X (2019) Lateral roots: random diversity in adversity. Trends in Plant Science 24: 810-825. doi:10.1016/j.tplants.2019.05.011.

Muller B, Martre P (2019) Plant and crop simulation models: powerful tools to link physiology, genetics, and phenomics. Journal of Experimental Botany 70: 2339-2344. doi:10.1093/jxb/erz175.

Nahirñak V, Rivarola M, Almasia NI, Barrios Barón MP, Hopp HE, Vile D, Paniego N, Vazquez Rovere C (2019) Snakin-1 affects reactive oxygen species and ascorbic acid levels and hormone balance in potato. PLoS ONE 14: e0214165. doi:10.1371/journal.pone.0214165.

Negro SS, Millet E, Madur D, Bauland C, Combes V, Welcker C, Tardieu F, Charcosset A, Nicolas S (2019) Genotyping-by-sequencing and SNP-arrays are complementary for detecting quantitative trait loci by tagging different haplotypes in association studies. BMC Plant Biology 19: 318. doi:10.1186/s12870-019-1926-4.

Neveu P, Tireau A, Hilgert N, Negre V, Mineau-Cesari J, Brichet N, Chapuis R, Sanchez I, Pommier C, Charnomordic B, Tardieu F, Cabrera Bosquet L (2019) Dealing with multi-source and multi-scale information in plant phenomics: the ontology-driven Phenotyping Hybrid Information System. New Phytologist 221: 588-601. doi:doi:10.1111/nph.15385.

Ollat N, Cookson SJ, Destrac-Irvine A, Lauvergeat V, Ouaked-Lecourieux F, Marguerit E, Barrieu F, Dai Z, Duchêne E, Gambetta G, Gomes E, Lecourieux D, van Leeuwen C, Simonneau T, Torregrosa L, Vivin P, Delrot S (2019) Grapevine adaptation to abiotic stress: an overview. Acta Horticulturae 1248: 497-512. doi:10.17660/ActaHortic.2019.1248.68.

Parent B, Millet EJ, Tardieu F (2019) The use of thermal time in plant studies has a sound theoretical basis provided that confounding effects are avoided. Journal of Experimental Botany 70: 2359-2370. doi:10.1093/jxb/ery402.

Perez R, Fournier C, Cabrera Bosquet L, Artzet S, Pradal C, Brichet N, Chen TW, Chapuis R, Welcker C, Tardieu F (2019) Changes in the vertical distribution of leaf area enhanced light interception efficiency in maize over generations of selection. Plant, Cell and Environment 42: 2105-2119. doi:10.1111/pce.13539.

Porter JR, Challinor AJ, Henriksen CB, Howden SM, Martre P, Smith P (2019) Invited review: Intergovernmental Panel on Climate Change, agriculture, and food—A case of shifting cultivation and history. Global Change Biology 25: 2518-2529. doi:10.1111/gcb.14700.

Reynolds D, Baret F, Welcker C, Bostrom A, Ball J, Cellini F, Lorence A, Chawade A, Khafif M, Noshita K, Mueller-Linow M, Zhou J, Tardieu F (2019) What is cost-efficient phenotyping? Optimizing costs for different scenarios. Plant Science 282: 14-22. doi:10.1016/j.plantsci.2018.06.015.

Rincent R, Malosetti M, Ababaei B, Touzy G, Mini A, Bogard M, Martre P, Le Gouis J, van Eeuwijk F (2019) Using crop growth model stress covariates and AMMI decomposition to better predict genotype-by-environment interactions. Theoretical and Applied Genetics 132: 3399-3411. doi:10.1007/s00122-019-03432-y.

Roitsch T, Cabrera-Bosquet L, Fournier A, Ghamkhar K, Jiménez-Berni J, Pinto F, Ober ES (2019) Review: New sensors and data-driven approaches—A path to next generation phenomics. Plant Science 282: 2-10. doi:10.1016/j.plantsci.2019.01.011.

Sartori K, Vasseur F, Violle C, Baron E, Gerard M, Rowe N, Ayala-Garay OJ, Christophe A, Jalón LGd, Masclef D, Harscouet E, Granado MdR, Chassagneux A, Kazakou E, Vile D (2019) Leaf economics and slow-fast adaptation across the geographic range of Arabidopsis thaliana. Scientific reports 9: 10758. doi:10.1038/s41598-019-46878-2.

Torregrosa L, Rienth M, Romieu C, Pellegrino A (2019) The microvine, a model for studies in grapevine physiology and genetics. OENO One 53: 373-391. doi:10.20870/oeno-one.2019.53.3.2409.

van Eeuwijk F, Bustos-Korts D, Millet EJ, Boer M, Kruijer W, Thompson A, Malosetti M, Iwata H, Quiroz R, Kuppe C, Muller O, Blazakis KN, Yu K, Tardieu F, Chapman S (2019) Modelling strategies for assessing and increasing the effectiveness of new phenotyping techniques in plant breeding. Plant Science 282: 23-39. doi:10.1016/j.plantsci.2018.06.018.

Vasseur F, Fouqueau L, de Vienne D, Nidelet T, Violle C, Weigel D (2019) Nonlinear phenotypic variation uncovers the emergence of heterosis in Arabidopsis thaliana. Plos Biology 17: e3000214. doi:10.1371/journal.pbio.3000214.

Vrignon-Brenas S, Metay A, Leporatti R, Gharibi S, Fraga A, Dauzat M, Rolland G, Pellegrino A (2019) Gradual responses of grapevine yield components and carbon status to nitrogen supply. OENO One 53: 289-306. doi:10.20870/oeno-one.2019.53.2.2431.


Abichou M, Fournier C, Dornbusch T, Chambon C, De Solan B, Gouache D, Andrieu B (2018) Parameterising wheat leaf and tiller dynamics for faithful reconstruction of wheat plants by structural plant models. Field Crops Research 218: 213-230. doi:10.1016/j.fcr.2018.01.010.

Alvarez Prado S, Cabrera-Bosquet L, Grau A, Coupel-Ledru A, Millet E, Welcker C, Tardieu F (2018) Phenomics allows identification of genomic regions affecting maize stomatal conductance with conditional effects of water deficit and evaporative demand. Plant, Cell and Environment 41: 314-326. doi:10.1111/pce.13083.

Bergès, S.E., D. Vile, C. Vazquez-Rovere, S. Blanc, M. Yvon, A. Bédiée, et al. 2018. Interactions Between Drought and Plant Genotype Change Epidemiological Traits of Cauliflower mosaic virus. Frontiers in Plant Science 9: 703. doi:10.3389/fpls.2018.00703.

Bourion V, Heulin-Gotty K, Aubert V, Tisseyre P, Chabert-Martinello M, Pervent M, Delaitre C, Vile D, Siol M, Duc G, Brunel B, Burstin J, Lepetit M (2018) Co-inoculation of a Pea Core-Collection with Diverse Rhizobial Strains Shows Competitiveness for Nodulation and Efficiency of Nitrogen Fixation Are Distinct traits in the Interaction. Frontiers in Plant Science 8: 2249. doi:10.3389/fpls.2017.02249.

Dubois M, Selden K, Bediee A, Rolland G, Baumberger N, Noir S, Bach L, Lamy G, Granier C, Genschik P (2018) SIAMESE-RELATED1 is regulated post-translationally and participates in repression of leaf growth under moderate drought. Plant Physiology 176: 2834-2850. doi:10.1104/pp.17.01712.

Garin G, Pradal C, Fournier C, Claessen D, Houlès V, Robert C (2017) Modelling interaction dynamics between two foliar pathogens in wheat: a multi-scale approach. Annals of Botany 121: 927-940. doi:10.1093/aob/mcx186.

Kimball, B.A., G.W. Wall, J.W. White, M.J. Ottman and P. Martre. 2018. Wheat response to a wide range of temperatures, as determined from the Hot Serial Cereal (HSC) Experiment. Open Data Journal for Agricultural Research 4: 16-21. doi:10.18174/odjar.v4i0.15829.

Mailhol, J.C., R. Albasha, B. Cheviron, J.M. Lopez, P. Ruelle and C. Dejean. 2018. The PILOTE-N model for improving water and nitrogen management practices: Application in a Mediterranean context. Agricultural Water Management 204: 162-179. doi:10.1016/j.agwat.2018.04.015.

Martre P, Dambreville A (2018) A Model of Leaf Coordination to Scale-Up Leaf Expansion from the Organ to the Canopy. Plant Physiology 176: 704-716. doi:10.1104/pp.17.00986.

Martre P, Derory J (2018) Rendement du blé : le stress hydrique, principal facteur limitant en Europe. Perspectives Agricoles 453: 38-40

Pantin F, Blatt MR (2018) Stomatal Response to Humidity: Blurring the Boundary between Active and Passive Movement. Plant Physiology 176: 485-488. doi:10.1104/pp.17.01699.

Passot, S., B. Moreno-Ortega, D. Moukouanga, C. Balsera, S. Guyomarc'h, M. Lucas, et al. 2018. A new phenotyping pipeline reveals three types of lateral roots and a random branching pattern in two cereals. Plant Physiology 177: 896-910. doi:10.1104/pp.17.01648.

Pradal, C., S. Cohen-Boulakia, G. Heidsieck, E. Pacitti, F. Tardieu and P. Valduriez. 2018. Distributed management of scientific workflows for high-throughput plant phenotyping. ERCIM News 113: 36-37.

Robert C, Garin G, Abichou M, Houlès V, Pradal C, Fournier C (2018) Plant architecture and foliar senescence impact the race between wheat growth and Zymoseptoria tritici epidemics. Annals of Botany  Ann. Bot. 121: 975-989. doi:10.1093/aob/mcx192.

Roucou A, Violle C, Fort F, Roumet P, Ecarnot M, Vile D (2018) Shifts in plant functional strategies over the course of wheat domestication. Journal of Applied Ecology 55: 25-37. doi:10.1111/1365-2664.13029.

Rymaszewski, W., M. Dauzat, A. Bédiée, G. Rolland, N. Luchaire, C. Granier, et al. 2018. Measurement of Arabidopsis thaliana Plant Traits Using the PHENOPSIS Phenotyping Platform. Bio-Protocol 8: e2739. doi:10.21769/BioProtoc.2739.

Tao F, Rötter RP, Palosuo T, Gregorio Hernández Díaz-Ambrona C, Mínguez MI, Semenov MA, Kersebaum KC, Nendel C, Specka X, Hoffmann H, Ewert F, Dambreville A, Martre P, Rodríguez L, Ruiz-Ramos M, Gaiser T, Höhn JG, Salo T, Ferrise R, Bindi M, Cammarano D, Schulman AH (2018) Contribution of crop model structure, parameters and climate projections to uncertainty in climate change impact assessments. Global Change Biology 24: 1291-1307. doi:10.1111/gcb.14019.

Tardieu F, Simonneau T, Muller B (2018) The Physiological Basis of Drought Tolerance in Crop Plants: A Scenario-Dependent Probabilistic Approach. Annual review of plant biology 69: 733-759. doi:10.1146/annurev-arplant-042817-040218.

Turc O, Tardieu F (2018) Drought affects abortion of reproductive organs by exacerbating developmentally-driven processes, via expansive growth and hydraulics. Journal of Experimental Botany 69: 3245-3254. doi:10.1093/jxb/ery078.

Varshney, R.K., R. Tuberosa and F. Tardieu. 2018. Progress in understanding drought tolerance: from alleles to cropping systems. Journal of Experimental Botany 69: 3175-3179. doi:10.1093/jxb/ery187.

Vasseur F, Exposito-Alonso M, Ayala-Garay OJ, Wang G, Enquist BJ, Vile D, Violle C, Weigel D (2018) Adaptive diversification of growth allometry in the plant Arabidopsis thaliana. Proceedings of the National Academy of Sciences 115: 3416-3421. doi:10.1073/pnas.1709141115

Webber H., White J.W., Kimball B.A., Ewert F., Asseng S., Eyshi Rezaei E., Pinter P.J., Hatfield J.L., Reynolds M.P., Ababaei B., Bindi M., Doltra J., Ferrise R., Kage H., Kassie B.T., Kersebaum K.-C., Luig A., Olesen J.E., Semenov M.A.,Stratonovitch P., Ratjen A.M., LaMorte R.L., Leavitt S.W., Hunsaker D.J., Wall G.W., Martre P. (2018) Physical robustness of canopy temperature models for crop heat stress simulation across environments and production conditions. Field Crops Research 216:75-88. DOI: 10.1016/j.fcr.2017.11.005.


Bonnot T., Bancel E., Alvarez D., Davanture M., Boudet J., Pailloux M., Zivy M., Ravel C., Martre P. (2017) Grain subproteome responses to nitrogen and sulfur supply in diploid wheat Triticum monococcum ssp. monococcum. Plant Journal 91:894-910. DOI: 10.1111/tpj.13615.

Brichet N., Fournier C., Turc O., Strauss O., Artzet S., Pradal C., Welcker C., Tardieu F., Cabrera-Bosquet L. (2017) A robot-assisted imaging pipeline for tracking the growths of maize ear and silks in a high-throughput phenotyping platform. Plant Methods 13:96. DOI: 10.1186/s13007-017-0246-7.

Buchanan-Wollaston V., Wilson Z., Tardieu F., Beynon J., Denby K. (2017) Harnessing diversity from ecosystems to crops to genes. Food and Energy Security 6:19-25. DOI: 10.1002/fes3.106.

Cabrera Bosquet L., Grieder C., Alvarez Prado S., Sánchez C., Araus J.L. (2017) Kernel δ18O reflects changes in apical dominance and plant transpiration in tropical maize. Journal of Agronomy and Crop Science 203:277-285. DOI: 10.1111/jac.12196.

Chenu K., Porter J.R., Martre P., Basso B., Chapman S.C., Ewert F., Bindi M., Asseng S. (2017) Contribution of Crop Models to Adaptation in Wheat. Trends in Plant Science 22:472-490. DOI: 10.1016/j.tplants.2017.02.003.

Coupel-Ledru A., Tyerman S., Masclef D., Lebon E., Christophe A., Edwards E.J., Simonneau T. (2017) Abscisic acid down-regulates hydraulic conductance of grapevine leaves in isohydric genotypes only. Plant Physiology 175:1121-1134. DOI: 10.1104/pp.17.00698.

Dambreville A., Griolet M., Rolland G., Dauzat M., Bédiée A., Balsera C., Muller B., Vile D., Granier C. (2017) Phenotyping oilseed rape growth-related traits and their responses to water deficit: the disturbing pot size effect. Functional Plant Biology 44:35-45. DOI:

Gallusci P., Dai Z., Génard M., Gauffretau A., Leblanc-Fournier N., Richard-Molard C., Vile D., Brunel-Muguet S. (2017) Epigenetics for Plant Improvement: Current Knowledge and Modeling Avenues. Trends in Plant Science 22:610-623. DOI: 10.1016/j.tplants.2017.04.009.

Koch G., Dambreville A., Rolland G., Bertin N., Granier C. (2017) A multi-scale pipeline for reproducible analyses of tomato leaf expansion and its plasticity. Acta Horticulturae 1160:105-112. DOI: 10.17660/ActaHortic.2017.1160.15.

Lacube S., Fournier C., Palaffre C., Millet E.J., Tardieu F., Parent B. (2017) Distinct controls of leaf widening and elongation by light and evaporative demand in maize. Plant, Cell & Environment 40:2017-2028. DOI: 10.1111/pce.13005.

Liu S., Baret F., Abichou M., Boudon F., Thomas S., Zhao K., Fournier C., Andrieu B., Irfan K., Hemmerlé M., Solan B.d. (2017) Estimating wheat green area index from ground-based LiDAR measurement using a 3D canopy structure model. Agricultural and Forest Meteorology 247:12-20. DOI: 10.1016/j.agrformet.2017.07.007.

Lohraseb I., Collins N.C., Parent B. (2017) Diverging temperature responses of CO2 assimilation and plant development explain the overall effect of temperature on biomass accumulation in wheat leaves and grains. AoB Plants 9:plw092. DOI: 10.1093/aobpla/plw092.

Louault F., Pottier J., Note P., Vile D., Soussana J.-F., Carrère P. (2017) Complex plant community responses to modifications of disturbance and nutrient availability in productive permanent grasslands. Journal of Vegetation Science 28:538-549. DOI: 10.1111/jvs.12509.

Luchaire N., Rienth M., Romieu C., Nehe A., Chatbanyong R., Houel C., Ageorges A., Gibon Y., Turc O., Muller B., Torregrosa L., Pellegrino A. (2017) Microvine: A New Model to Study Grapevine Growth and Developmental Patterns and their Responses to Elevated Temperature. American Journal of Enology and Viticulture 68:283-292. DOI: 10.5344/ajev.2017.16066.

Ly D., Chenu K., Gauffreteau A., Rincent R., Huet S., Gouache D., Martre P., Bordes J., Charmet G. (2017) Nitrogen nutrition index predicted by a crop model improves the genomic prediction of grain number for a bread wheat core collection. Field Crops Research 214:331-340. DOI: 10.1016/j.fcr.2017.09.024.

Maiorano A., Martre P., Asseng S., Ewert F., Müller C., Rötter R.P., Ruane A.C., Semenov M.A., Wallach D., Wang E., Alderman P.D., Kassie B.T., Biernath C., Basso B., Cammarano D., Challinor A.J., Doltra J., Dumont B., Rezaei E.E., Gayler S., Kersebaum K.C., Kimball B.A., Koehler A.-K., Liu B., O’Leary G.J., Olesen J.E., Ottman M.J., Priesack E., Reynolds M., Stratonovitch P., Streck T., Thorburn P.J., Waha K., Wall G.W., White J.W., Zhao Z., Zhu Y. (2017) Crop model improvement reduces the uncertainty of the response to temperature of multi-model ensembles. Field Crops Research 202:5-20. DOI: 10.1016/j.fcr.2016.05.001.

Martre P., Yin X., Ewert F. (2017) Modeling crops from genotype to phenotype in a changing climate. Field Crops Research 202:1-4. DOI: 10.1016/j.fcr.2017.01.002.

Moreno-Ortega B., Fort G., Muller B., Guédon Y. (2017) Identifying Developmental Zones in Maize Lateral Root Cell Length Profiles using Multiple Change-Point Models. Frontiers in Plant Science 8:1750. DOI: 10.3389/fpls.2017.01750.

Moualeu-Ngangue D.P., Chen T.-W., Stützel H. (2017) A new method to estimate photosynthetic parameters through net assimilation rate−intercellular space CO2 concentration (A−Ci) curve and chlorophyll fluorescence measurements. New Phytologist 213:1543-1554. DOI: 10.1111/nph.14260.

Parent B., Bonneau J., Maphosa L., Kovalchuk A., Langridge P., Fleury D. (2017) Quantifying wheat sensitivities to environmental constraints to dissect G x E in the field. Plant Physiology 174:1669-1682. DOI: 10.1104/pp.17.00372.

Pradal C., Artzet S., Chopard J., Dupuis D., Fournier C., Mielewczik M., Nègre V., Neveu P., Parigot D., Valduriez P., Cohen-Boulakia S. (2017) InfraPhenoGrid: A scientific workflow infrastructure for plant phenomics on the Grid. Future Generation Computer Systems 67:341-353. DOI:

Roy J., Tardieu F., Tixier-Boichard M., Schurr U. (2017) European infrastructures for sustainable agriculture. Nature Plants 3:756-758. DOI: 10.1038/s41477-017-0027-3.

Ruane A.C., Rosenzweig C., Asseng S., Boote K.J., Elliott J., Ewert F., Jones J.W., Martre P., McDermid S.P., Müller C., Snyder A., Thorburn P.J. (2017) An AgMIP framework for improved agricultural representation in integrated assessment models. Environmental Research Letters 12:125003. DOI: 10.1088/1748-9326/aa8da6. 

Rymaszewski W., Vile D., Bediee A., Dauzat M., Luchaire N., Kamrowska D., Granier C., Hennig J. (2017) Stress-Related Gene Expression Reflects Morphophysiological Responses to Water Deficit. Plant Physiology 174:1913-1930. DOI: 10.1104/pp.17.00318.

Simonneau T., Lebon E., Coupel-Ledru A., Marguerit E., Rossdeutsch L., Ollat N. (2017) Adapting plant material to face water stress in vineyards: which physiological targets for an optimal control of plant water status? OENO One 51:167-179. DOI: 10.20870/oeno-one.2016.0.0.1870.

Tao F., Rötter R.P., Palosuo T., Díaz-Ambrona C.G.H., Mínguez M.I., Semenov M.A., Kersebaum K.C., Nendel C., Cammarano D., Hoffmann H., Ewert F., Dambreville A., Martre P., Rodríguez L., Ruiz-Ramos M., Gaiser T., Höhn J.G., Salo T., Ferrise R., Bindi M., Schulman A.H. (2017) Designing future barley ideotypes using a crop model ensemble. European Journal of Agronomy 82:144-162. DOI: 10.1016/j.eja.2016.10.012.

Tardieu F., Cabrera Bosquet L., Pridmore T., Bennett M. (2017) Plant Phenomics, From Sensors to Knowledge. Current biology 27:R770-R783. DOI: 10.1016/j.cub.2017.05.055.

Tardieu F., Draye X., Javaux M. (2017) Root Water Uptake and Ideotypes of the Root System: Whole-Plant Controls Matter. Vadose Zone Journal 16. doi:10.2136/vzj2017.05.0107. DOI: 10.2136/vzj2017.05.0107.

Tardieu F., Parent B. (2017) Predictable ‘meta-mechanisms’ emerge from feedbacks between transpiration and plant growth and cannot be simply deduced from short-term mechanisms. Plant, Cell and Environment 40:846-857. DOI: 10.1111/pce.12822.

Tardieu F., Varshney R.K., Tuberosa R. (2017) Improving crop performance under drought – cross-fertilization of disciplines. Journal of Experimental Botany 68:1393-1398. DOI: 10.1093/jxb/erx042.

Torregrosa L., Bigard A., Doligez A., Lecourieux D., Rienth M., Luchaire N., Pieri P., Chatbanyong R., Shahood R., Farnos M., Roux C., Adiveze A., Pillet J., Sire Y., Zumstein E., Veyret M., Le Cunff L., Lecourieux F., Saurin N., Muller B., Ojeda H., Houel C., Peros J.-P., This P., Pellegrino A., Romieu C. (2017) Developmental, molecular and genetic studies on grapevine response to temperature open breeding strategies for adaptation to warming. OENO One 51:155-165. DOI: 10.20870/oeno-one.2016.0.0.1587.

Valle B., Simonneau T., Boulord R., Sourd F., Frisson T., Ryckewaert M., Hamard P., Brichet N., Dauzat M., Christophe A. (2017) PYM: a new, affordable, image-based method using a Raspberry Pi to phenotype plant leaf area in a wide diversity of environments. Plant Methods 13:98. DOI: 10.1186/s13007-017-0248-5.

Valle B., Simonneau T., Sourd F., Pechier P., Hamard P., Frisson T., Ryckewaert M., Christophe A. (2017) Increasing the total productivity of a land by combining mobile photovoltaic panels and food crops. Applied Energy 206:1495-1507. DOI:

Van Munster M., Yvon M., Vile D., Dader Alonso B., Fereres A., Blanc S. (2017) Water deficit enhances the transmission of plant viruses by insect vectors. PLoS ONE 12:e0174398. DOI: 10.1371/journal.pone.0174398.

Vivin P., Lebon E., Dai Z., Duchêne E., Marguerit E., García de Cortázar-Atauri I., Zhu J., Simonneau T., Van Leeuwen C., Delrot S., Ollat N. (2017) Combining ecophysiological models and genetic analysis: a promising way to dissect complex adaptive traits in grapevine. OENO One 51:181-189. DOI: 10.20870/oeno-one.2016.0.0.1588.

Wang E., Martre P., Zhao Z., Ewert F., Maiorano A., Rötter R., Kimball B.A., Ottman M.J., Wall G.W., White J.W., Reynolds M.P., Alderman P.D., Aggarwal P.K., Anothai J., Basso B., Biernath C., Cammarano D., Challinor A.J., De Sanctis G., Doltra J., Fereres E., Garcia-Vila M., Gayler S., Hoogenboom G., Hunt L.A., Izaurralde R.C., Jabloun M., Jones C.D., Kersebaum K.C., Koehler A.-K., Liu L., Muller C., Naresh Kumar S., Nendel C., O'Leary G.J., Olesen J.E., Palosuo T., Priesack E., Rezaei E.E., Ripoche D., Ruane A.C., Semenov M.A., Shcherbak L., Stöckle C., Stratonovitch P., Streck T., Supit I., Tao F., Thorburn P., Waha K., Wallach D., Wang Z., Wolf J., Zhu Y., Asseng S. (2017) The uncertainty of crop yield projections is reduced by improved temperature response functions. Nature Plants 3:17102. DOI: 10.1038/nplants.2017.102.

Webber H., Martre P., Asseng S., Kimball B., White J., Ottman M., Wall G.W., De Sanctis G., Doltra J., Grant R., Kassie B., Maiorano A., Olesen J.E., Ripoche D., Rezaei E.E., Semenov M.A., Stratonovitch P., Ewert F. (2017) Canopy temperature for simulation of heat stress in irrigated wheat in a semi-arid environment: A multi-model comparison. Field Crops Research 202:21-35. DOI: 10.1016/j.fcr.2015.10.009.

Yvon M., Vile D., Brault V., Blanc S., Van Munster M. (2017) Drought reduces transmission of Turnip yellows virus, an insect-vectored circulative virus. Virus Research 241:131-136. DOI: 10.1016/j.virusres.2017.07.009.

Zhao C., Liu B., Piao S., Wang X., Lobell D.B., Huang Y., Huang M., Yao Y., Bassu S., Ciais P., Durand J.-L., Elliott J., Ewert F., Janssens I.A., Li T., Lin E., Liu Q., Martre P., Müller C., Peng S., Peñuelas J., Ruane A.C., Wallach D., Wang T., Wu D., Liu Z., Zhu Y., Zhu Z., Asseng S. (2017) Temperature increase reduces global yields of major crops in four independent estimates. Proceedings of the National Academy of Sciences 114:9326-9331. DOI: 10.1073/pnas.1701762114.



Bac-Molenaar J.A., Granier C., Keurentjes J.J.B., Vreugdenhil D. (2016) Genome-wide association mapping of time-dependent growth responses to moderate drought stress in Arabidopsis. Plant, Cell & Environment 39:88-102. DOI: 10.1111/pce.12595.

Beaumelle L., Vile D., Lamy I., Vandenbulcke F., Gimbert F., Hedde M. (2016) A structural equation model of soil metal bioavailability to earthworms: confronting causal theory and observations using a laboratory exposure to field-contaminated soils. Science of The Total Environment 569-570:961-972. DOI:

Cabrera-Bosquet L., Fournier C., Brichet N., Welcker C., Suard B., Tardieu F. (2016) High-throughput estimation of incident light, light interception and radiation-use efficiency of thousands of plants in a phenotyping platform. New Phytologist 212:269-281. DOI: 10.1111/nph.14027.

Cammarano D., Rotter R.P., Asseng S., Ewert F., Wallach D., Martre P., Hatfield J.L., Jones J.W., Rosenzweig C., Ruane A.C., Boote K.J., Thorburn P.J., Kersebaum K.C., Aggarwal P.K., Angulo C., Basso B., Bertuzzi P., Biernath C., Brisson N., Challinor A.J., Doltra J., Gayler S., Goldberg R., Heng L., Hooker J., Hunt L.A., Ingwersen J., Izaurralde R.C., Muller C., Kumar S.N., Nendel C., O'Leary G.J., Olesen J.E., Osborne T.M., Palosuo T., Priesack E., Ripoche D., Semenov M.A., Shcherbak I., Steduto P., Stockle C.O., Stratonovitch P., Streck T., Supit I., Tao F., Travasso M., Waha K., White J.W., Wolf J. (2016) Uncertainty of wheat water use: Simulated patterns and sensitivity to temperature and CO2. Field Crops Research 198:80-92. DOI: 10.1016/j.fcr.2016.08.015.

Cheviron B., Vervoort R.W., Albasha R., Dairon R., Le Priol C., Mailhol J.-C. (2016) A framework to use crop models for multi-objective constrained optimization of irrigation strategies. Environmental Modelling and Software 86:145-157. DOI: 10.1016/j.envsoft.2016.09.001.

Coupel-Ledru A., Lebon E., Christophe A., Gallo A., Gago P., Pantin F., Doligez A., Simonneau T. (2016) Reduced nighttime transpiration is a relevant breeding target for high water-use efficiency in grapevine. Proceedings of the National Academy of Sciences of the United States of America 113:8963-8968. DOI: 10.1073/pnas.1600826113.

Dauzat M., Dambreville A., Bresson J., Vile D., Muller B., Nègre V., Koch G., Vasseur F., Bediee A., Desigaux M., Fourreau D., Granier C. (2016) PHENOPSIS Quelles évolutions technologiques du premier automate de phénotypage des plantes? Cahier des Techniques INRAE 89:1.

Fernandez O., Urrutia M., Bernillon S., Giauffret C., Tardieu F., Le Gouis J., Langlade N., Charcosset A., Moing A., Gibon Y. (2016) Fortune telling: metabolic markers of plant performance. Metabolomics 12:158. DOI: 10.1007/s11306-016-1099-1.

Gouesnard B., Zanetto A., Welcker C. (2016) Identification of adaptation traits to drought in collections of maize landraces from southern Europe and temperate regions. Euphytica 209:565-584. DOI: 10.1007/s10681-015-1624-8.

Jeudy C., Adrian M., Baussard C., Bernard C., Bernaud E., Bourion V., Busset H., Cabrera-Bosquet L., Cointault F., Han S., Lamboeuf M., Moreau D., Pivato B., Prudent M., Trouvelot S., Truong H.N., Vernoud V., Voisin A.-S., Wipf D., Salon C. (2016) RhizoTubes as a new tool for high throughput imaging of plant root development and architecture: test, comparison with pot grown plants and validation. Plant Methods 12:31. DOI: 10.1186/s13007-016-0131-9.

Kovalchuk N., Laga H., Cai J., Kumar P., Parent B., Lu Z., Miklavcic S.J., Haefele S.M. (2016) Phenotyping of plants in competitive but controlled environments: a study of drought response in transgenic wheat. Functional Plant Biology 44:290-301. DOI: 10.1071/fp16202.

Lefoulon C., Boeglin M., Moreau B., Very A.-A., Szponarski W., Dauzat M., Michard E., Gaillard I., Chérel I. (2016) The Arabidopsis AtPP2CA protein phosphatase inhibits the GORK K+ efflux channel and exerts a dominant suppressive effect on phosphomimetic activating mutations. Journal of Biological Chemistry 291:6521-6533. DOI: 10.1074/jbc.M115.711309.

Lièvre M., Granier C., Guédon Y. (2016) Identifying developmental phases in the Arabidopsis thaliana rosette using integrative segmentation models. New Phytologist 210:1466-1478. DOI: 10.1111/nph.13861.

Liu B., Asseng S., Muller C., Ewert F., Elliott J., Lobell D.B., Martre P., Ruane A.C., Wallach D., Jones J., Rosenzweig C., Aggarwal P.K., Alderman P.D., Anothai J., Basso B., Biernath C., Cammarano D., Challinor A., Deryng D., De Sanctis G., Doltra J., Fereres E., Folberth C., Garcia-Vila M., Gayler S., Hoogenboom G., Hunt L.A., Izaurralde R.C., Jabloun M., Jones C.D., Kersebaum K.C., Kimball B.A., Koehler A.K., Kumar S.N., Nendel C., O'Leary G.J., Olesen J.E., Ottman M.J., Palosuo T., Prasad P.V.V., Priesack E., Pugh T.A.M., Reynolds M., Rezaei E.E., Rotter R.P., Schmid E., Semenov M.A., Shcherbak I., Stehfest E., Stockle C.O., Stratonovitch P., Streck T., Supit I., Tao F., Thorburn P., Waha K., Wall G.W., Wang E., White J.W., Wolf J., Zhao Z., Zhu Y. (2016) Similar estimates of temperature impacts on global wheat yield by three independent methods. Nature Climate Change 6:1130-1136. DOI: 10.1038/nclimate3115.

Loranger J., Blonder B., Garnier E., Shipley B., Vile D., Violle C. (2016) Occupancy and overlap in trait space along a successional gradient in Mediterranean old fields. American Journal of Botany 103:1050-1060. DOI: 10.3732/ajb.1500483.

Mandolino C.I., D'Andrea K.E., Piedra C.V., Alvarez Prado S., Olmos S.E., Cirilo A.G., Otegui M.E. (2016) Kernel weight in maize: genetic control of its physiological and compositional determinants in a dent x flint-caribbean RIL population. Maydica 61:M38.

Millet E.J., Welcker C., Kruijer W., Negro S., Coupel-Ledru A., Nicolas S.D., Laborde J., Bauland C., Praud S., Ranc N., Presterl T., Tuberosa R., Bedo Z., Draye X., Usadel B., Charcosset A., Van Eeuwijk F., Tardieu F. (2016) Genome-Wide Analysis of Yield in Europe: Allelic Effects Vary with Drought and Heat Scenarios. Plant Physiology 172:749-764. DOI: 10.1104/pp.16.00621.

Moualeu Ngangue D.P., Chen T.-W., Stützel H. (2016) A modelling approach to quantify the effects of stomatal behaviour and mesophyll conductance on leaf water use efficiency. Frontiers in Plant Science 7:875. DOI: 10.3389/fpls.2016.00875.

Neghliz H., Cochard H., Brunel N., Martre P. (2016) Ear rachis xylem occlusion and associated loss in hydraulic conductance coincide with the end of grain filling for wheat. Frontiers in Plant Science 7:920. DOI: 10.3389/fpls.2016.00920.

Oury V., Caldeira C.F., Prodhomme D., Pichon J.-P., Gibon Y., Tardieu F., Turc O. (2016) Is change in ovary carbon status a cause or a consequence of maize ovary abortion in water deficit during flowering? Plant Physiology 171:997-1008. DOI: 10.1104/pp.15.01130.

Oury V., Tardieu F., Turc O. (2016) Ovary apical abortion under water deficit is caused by changes in sequential development of ovaries and in silk growth rate in maize. Plant Physiology 171:986-996. DOI: 10.1104/pp.15.00268.

Parent B., Vile D., Violle C., Tardieu F. (2016) Towards parsimonious ecophysiological models that bridge ecology and agronomy. New Phytologist 210:380-382. DOI: 10.1111/nph.13811.

Passot S., Gnacko F., Moukouanga D., Lucas M., Guyomarc’h S., Ortega B., Atkinson J.A., Belko M.N., Bennett M.J., Gantet P., Wells D.M., Guédon Y., Vigouroux Y., Verdeil J.-L., Muller B., Laplaze L. (2016) Characterization of Pearl Millet Root Architecture and Anatomy Reveals Three Types of Lateral Roots. Frontiers in Plant Science 7:829. DOI: 10.3389/fpls.2016.00829.

Ruane A.C., Hudson N.I., Asseng S., Camarrano D., Ewert F., Martre P., Boote K.J., Thorburn P.J., Aggarwal P.K., Angulo C., Basso B., Bertuzzi P., Biernath C., Brisson N., Challinor A.J., Doltra J., Gayler S., Goldberg R., Grant R.F., Heng L., Hooker J., Hunt L.A., Ingwersen J., Izaurralde R.C., Kersebaum K.C., Kumar S.N., Müller C., Nendel C., O'Leary G., Olesen J.E., Osborne T.M., Palosuo T., Priesack E., Ripoche D., Rötter R.P., Semenov M.A., Shcherbak I., Steduto P., Stöckle C.O., Stratonovitch P., Streck T., Supit I., Tao F., Travasso M., Waha K., Wallach D., White J.W., Wolf J. (2016) Multi-wheat-model ensemble responses to interannual climate variability. Environmental Modelling and Software 81:86-101. DOI: 10.1016/j.envsoft.2016.03.008.

Ryan A.C., Dodd I.C., Rothwell S.A., Jones R., Tardieu F., Draye X., Davies W.J. (2016) Gravimetric phenotyping of whole plant transpiration responses to atmospheric vapour pressure deficit identifies genotypic variation in water use efficiency. Plant Science 251:101-109. DOI: 10.1016/j.plantsci.2016.05.018.

Shirdelmoghanloo H., Lohraseb I., Rabie H.S., Brien C., Parent B., Collins N.C. (2016) Heat susceptibility of grain filling in wheat (Triticum aestivum L.) linked with rapid chlorophyll loss during a 3-day heat treatment. Acta Physiologiae Plantarum 38:208. DOI: 10.1007/s11738-016-2208-5.

Tardieu F. (2016) Too many partners in root-shoot signals. Does hydraulics qualify as the only signal that feeds back over time for reliable stomatal control? New Phytologist 212:802-804. DOI: 10.1111/nph.14292.

Tenaillon​ M.I., Manicacci D., Nicolas S.D., Tardieu F., Welcker C. (2016) Testing the link between genome size and growth rate in maize. PeerJ 4:e2408. DOI: 10.7717/peerj.2408.

Turc O., Bouteillé M., Fuad-Hassan A., Welcker C., Tardieu F. (2016) The growth of vegetative and reproductive structures (leaves and silks) respond similarly to hydraulic cues in maize. New Phytologist 212:377-388. DOI: 10.1111/nph.14053.


Aurélien Ausset :
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See also

Modification date: 02 July 2024 | Publication date: 11 June 2020 | By: Denis Vile, Aurélien Ausset