2022
Affortit P, Effa-Effa B, Ndoye MS, Moukouanga D, Luchaire N, Cabrera-Bosquet L, Peralvarez M, Pilloni R, Welcker C, Champion A, Gantet P, Diedhiou AG, Manneh B, Aroca R, Vadez V, Laplaze L, Cubry P, Grondin A (2022) Physiological and genetic control of transpiration efficiency in African rice, Oryza glaberrima Steud. Journal of Experimental Botany 73: 5279-5293. doi:10.1093/jxb/erac156.
Eyland D, Luchaire N, Cabrera-Bosquet L, Parent B, Janssens SB, Swennen R, Welcker C, Tardieu F, Carpentier S (2022) High-throughput phenotyping reveals differential transpiration behavior within the banana wild relatives highlighting diversity in drought tolerance. Plant, Cell & Environment 45: 1647-1663. doi:10.1111/pce.14310.
Perez-Valencia DM, Rodriguez-Alvarez MX, Boer MP, Kronenberg L, Hund A, Cabrera-Bosquet L, Millet EJ, van Eeuwijk FA (2022) A two-stage approach for the spatio-temporal analysis of high-throughput phenotyping data. Scientific reports 12: 3177. doi:10.1038/s41598-022-06935-9.
Tardieu F (2022) Different avenues for progress apply to drought tolerance, water use efficiency and yield in dry areas. Current opinion in biotechnology 73: 128-134. doi:10.1016/j.copbio.2021.07.019.
2021
Affortit P, Effa-Effa B, Ndoye MS, Moukouanga D, Luchaire N, Cabrera-Bosquet L, Perálvarez M, Pilloni R, Welcker C, Champion A (2021) High-throughput phenotyping reveals a link between transpiration efficiency and transpiration restriction under high evaporative demand and new loci controlling water use-related traits in African rice, Oryza glaberrima Steud. bioRxiv 2021.11.28: 470237. doi:10.1101/2021.11.28.470237.
Bengoa Luoni SA, Cenci A, Moschen S, Nicosia S, Radonic LM, Sabio y Garcia JV, Langlade NB, Vile D, Vazquez Rovere C, Fernandez P (2021) Genome-wide and comparative phylogenetic analysis of senescence-associated NAC transcription factors in sunflower (Helianthus annuus). Bmc Genomics 22:893. doi:10.1186/s12864-021-08199-5.
Bergès SE, Vile D, Yvon M, Masclef D, Dauzat M, Van Munster M (2021) Water deficit changes the relationships between epidemiological traits of Cauliflower mosaic virus across diverse Arabidopsis thaliana accessions. Scientific reports 11: 24103. doi:10.1038/s41598-021-03462-x.
Eyland D, Breton C, Sardos J, Kallow S, Panis B, Swennen R, Paofa J, Tardieu F, Welcker C, Janssens SB, Carpentier SC (2021) Filling the gaps in gene banks: Collecting, characterizing, and phenotyping wild banana relatives of Papua New Guinea. Crop Science 61: 137-149. doi:10.1002/csc2.20320.
Fagny M, Kuijjer ML, Stam M, Joets J, Turc O, Roziere J, Pateyron S, Venon A, Vitte C (2021) Identification of Key Tissue-Specific, Biological Processes by Integrating Enhancer Information in Maize Gene Regulatory Networks. Frontiers in Genetics 11: 606285. doi:10.3389/fgene.2020.606285.
Vargas-Rojas LF (2021) Ontological Formalisation of Mathematical Equations for Phenomic Data Exploitation. In V Ruben, D Anastasia, H Aidan, dA Claudia, T Ilaria, B Arne, M Simon, O Femke, T Riccardo, A Mehwish, eds, The Semantic Web: ESWC 2021 Satellite Events, Vol 12739. Springer International Publishing, Cham, pp 176-185.
2020
Bergès SE, Vasseur F, Bediée A, Rolland G, Masclef D, Dauzat M, van Munster M, Vile D (2020) Natural variation of Arabidopsis thaliana responses to Cauliflower mosaic virus infection upon water deficit. PLOS Pathogens 16: e1008557. doi:10.1371/journal.ppat.1008557.
Blein-Nicolas M, Negro SS, Balliau T, Welcker C, Cabrera-Bosquet L, Nicolas SD, Charcosset A, Zivy M (2020) A systems genetics approach reveals environment-dependent associations between SNPs, protein coexpression, and drought-related traits in maize. Genome research 30: 1593-1604. doi:10.1101/gr.255224.119.
Castelletti S, Coupel-Ledru A, Granato I, Palaffre C, Cabrera-Bosquet L, Tonelli C, Nicolas SD, Tardieu F, Welcker C, Conti L (2020) Maize adaptation across temperate climates was obtained via expression of two florigen genes. Plos Genetics 16: e1008882. doi:10.1371/journal.pgen.1008882.
Ding L, Milhiet T, Couvreur V, Nelissen H, Meziane A, Parent B, Aesaert S, Van Lijsebettens M, Inzé D, Tardieu F, Draye X, Chaumont F (2020) Modification of the expression of the aquaporin ZmPIP2;5 affects water relations and plant growth. Plant Physiology 182: 2154-2165. doi:10.1104/pp.19.01183.
Tardieu F (2020) Educated big data to study sensitivity to drought. Nature Food 1: 669-670. doi:10.1038/s43016-020-00187-4.
2019
Alvarez Prado S, Sanchez I, Cabrera Bosquet L, Grau A, Welcker C, Tardieu F, Hilgert N (2019) To clean or not to clean phenotypic datasets for outlier plants in genetic analyses? Journal of Experimental Botany70: 3693-3698. doi:10.1093/jxb/erz191.
Liu S, Martre P, Buis S, Abichou M, Andrieu B, Baret F (2019) Estimation of plant and canopy architectural traits using the D3P Digital Plant Phenotyping Platform. Plant Physiology 181: 881-890. doi:10.1104/pp.19.00554.
Millet E, Kruijer W, Coupel-Ledru A, Alvarez Prado S, Cabrera Bosquet L, Lacube S, Charcosset A, Welcker C, van Eeuwijk F, Tardieu F (2019) Genomic prediction of maize yield across European environmental conditions. Nature Genetics 51: 952-956. doi:10.1038/s41588-019-0414-y.
Neveu P, Tireau A, Hilgert N, Negre V, Mineau-Cesari J, Brichet N, Chapuis R, Sanchez I, Pommier C, Charnomordic B, Tardieu F, Cabrera Bosquet L (2019) Dealing with multi-source and multi-scale information in plant phenomics: the ontology-driven Phenotyping Hybrid Information System. New Phytologist 221: 588-601. doi:10.1111/nph.15385.
Perez R, Fournier C, Cabrera Bosquet L, Artzet S, Pradal C, Brichet N, Chen TW, Chapuis R, Welcker C, Tardieu F (2019) Changes in the vertical distribution of leaf area enhanced light interception efficiency in maize over generations of selection. Plant, Cell and Environment 42: 2105-2119. doi:10.1111/pce.13539.
van Eeuwijk F, Bustos-Korts D, Millet EJ, Boer M, Kruijer W, Thompson A, Malosetti M, Iwata H, Quiroz R, Kuppe C, Muller O, Blazakis KN, Yu K, Tardieu F, Chapman S (2019) Modelling strategies for assessing and increasing the effectiveness of new phenotyping techniques in plant breeding. Plant Science 282:23-39. doi:10.1016/j.plantsci.2018.06.018.
2018
Alvarez Prado S, Cabrera-Bosquet L, Grau A, Coupel-Ledru A, Millet E, Welcker C, Tardieu F (2018) Phenomics allows identification of genomic regions affecting maize stomatal conductance with conditional effects of water deficit and evaporative demand. Plant, Cell and Environment 41: 314-326. doi:10.1111/pce.13083.
Bergès S, Vile D, Vazquez Rovere C, Blanc S, Yvon M, Bediee A, Rolland G, Dauzat M, Van Munster M (2018) Interactions Between Drought and Plant Genotype Change Epidemiological Traits of Cauliflower mosaic virus. Frontiers in Plant Science 9: 1-11. doi:10.3389/fpls.2018.00703.
Dubois M, Selden K, Bediee A, Rolland G, Baumberger N, Noir S, Bach L, Lamy G, Granier C, Genschik P (2018) SIAMESE-RELATED1 is regulated post-translationally and participates in repression of leaf growth under moderate drought. Plant Physiology 176: 2834-2850. doi:10.1104/pp.17.01712.
Garin G, Pradal C, Fournier C, Claessen D, Houlès V, Robert C (2018) Modelling interaction dynamics between two foliar pathogens in wheat: a multi-scale approach. Annals of Botany 121: 927-940. doi:10.1093/aob/mcx186.
Journaux A, Mineau J, Negre V (2018) Du phénotypage au Big Data. Cahier des Techniques de l'INRA: 167-169. doi.
Koch G, Rolland G, Dauzat M, Bediee A, Baldazzi V, Bertin N, Guedon Y, Granier C (2018) Are compound leaves more complex than simple ones? A multi-scale analysis. Annals of Botany 122: 1173-1185. doi:10.1093/aob/mcy116.
Parent B, Leclere M, Lacube S, Semenov MA, Welcker C, Martre P, Tardieu F (2018) Maize yields over Europe may increase in spite of climate change, with an appropriate use of the genetic variability of flowering time. Proceedings of the National Academy of Sciences of the United States of America 115: 10642-10647. doi:10.1073/pnas.1720716115.
Pradal C, Cohen-Boulakia S, Heidsieck G, Pacitti E, Tardieu F, Valduriez P (2018) Distributed management of scientific workflows for high-throughput plant phenotyping. ERCIM News 113: 36-37. doi.
Rymaszewski W, Dauzat M, Bédiée A, Rolland G, Luchaire N, Granier C, Hennig J, Vile D (2018) Measurement of Arabidopsis thaliana Plant Traits Using the PHENOPSIS Phenotyping Platform. Bio-Protocol 8: e2739. doi:10.21769/BioProtoc.2739.
Sartori KFR, Vasseur F, Violle C, Baron E, Gerard M, Rowe N, Ayala-Garay OJ, Christophe A, Garcia De Jalon L, Masclef D, Harscouet E, Del Rey Granado M, Chassagneux A, Kazakou E, Vile D (2018) Leaf economics guides slow-fast adaptation across the geographic range of A. thaliana. bioRxiv: 487066. doi:10.1101/487066.
Tardieu F, Simonneau T, Muller B (2018) The Physiological Basis of Drought Tolerance in Crop Plants: A Scenario-Dependent Probabilistic Approach. Annual review of plant biology 69: 733-759. doi:10.1146/annurev-arplant-042817-040218.
Turc O, Tardieu F (2018) Drought affects abortion of reproductive organs by exacerbating developmentally-driven processes, via expansive growth and hydraulics. Journal of Experimental Botany 69: 3245-3254. doi:10.1093/jxb/ery078.
2017
Brichet N, Fournier C, Turc O, Strauss O, Artzet S, Pradal C, Welcker C, Tardieu F, Cabrera-Bosquet L (2017) A robot-assisted imaging pipeline for tracking the growths of maize ear and silks in a high-throughput phenotyping platform. Plant Methods 13: 96. doi:10.1186/s13007-017-0246-7.
Coupel-Ledru A, Tyerman S, Masclef D, Lebon E, Christophe A, Edwards EJ, Simonneau T (2017) Abscisic acid down-regulates hydraulic conductance of grapevine leaves in isohydric genotypes only. Plant Physiology 175: 1121-1134. doi:10.1104/pp.17.00698.
Dambreville A, Griolet M, Rolland G, Dauzat M, Bédiée A, Balsera C, Muller B, Vile D, Granier C (2017) Phenotyping oilseed rape growth-related traits and their responses to water deficit: the disturbing pot size effect. Functional Plant Biology 44: 35-45. doi:http://dx.doi.org/10.1071/FP16036.
Lacube S, Fournier C, Palaffre C, Millet EJ, Tardieu F, Parent B (2017) Distinct controls of leaf widening and elongation by light and evaporative demand in maize. Plant Cell and Environment 40: 2017-2028. doi:10.1111/pce.13005.
Pradal C, Artzet S, Chopard J, Dupuis D, Fournier C, Mielewczik M, Negre V, Neveu P, Parigot D, Valduriez P, Cohen-Boulakia S (2017) InfraPhenoGrid: A scientific workflow infrastructure for plant phenomics on the Grid. Future Generation Computer Systems 67: 341-353. doi:10.1016/j.future.2016.06.002.
Roy J, Tardieu F, Tixier-Boichard M, Schurr U (2017) European infrastructures for sustainable agriculture. Nature Plants 3: 756-758. doi:10.1038/s41477-017-0027-3.
Rymaszewski W, Vile D, Bediee A, Dauzat M, Luchaire N, Kamrowska D, Granier C, Hennig J (2017) Stress-Related Gene Expression Reflects Morphophysiological Responses to Water Deficit. Plant Physiology174: 1913-1930. doi:10.1104/pp.17.00318.
Tardieu F, Cabrera Bosquet L, Pridmore T, Bennett M (2017a) Plant Phenomics, From Sensors to Knowledge. Current biology 27: R770-R783. doi:10.1016/j.cub.2017.05.055.
Tardieu F, Draye X, Javaux M (2017b) Root Water Uptake and Ideotypes of the Root System: Whole-Plant Controls Matter. Vadose Zone Journal 16: 0107. doi:10.2136/vzj2017.05.0107.
2016
Bac-Molenaar JA, Granier C, Keurentjes JJB, Vreugdenhil D (2016) Genome-wide association mapping of time-dependent growth responses to moderate drought stress in Arabidopsis. Plant Cell and Environment 39: 88-102. doi:10.1111/pce.12595.
Cabrera-Bosquet L, Fournier C, Brichet N, Welcker C, Suard B, Tardieu F (2016) High-throughput estimation of incident light, light interception and radiation-use efficiency of thousands of plants in a phenotyping platform. New Phytologist 212: 269-281. doi:10.1111/nph.14027.
Coupel-Ledru A, Lebon E, Christophe A, Gallo A, Gago P, Pantin F, Doligez A, Simonneau T (2016) Reduced nighttime transpiration is a relevant breeding target for high water-use efficiency in grapevine. Proceedings of the National Academy of Sciences of the United States of America 113: 8963-8968. doi:10.1073/pnas.1600826113.
Dauzat M, Dambreville A, Bresson J, Vile D, Muller B, Nègre V, Koch G, Vasseur F, Bediee A, Desigaux M, Fourreau D, Granier C (2016) PHENOPSIS Quelles évolutions technologiques du premier automate de phénotypage des plantes? Cahier des Techniques de l'INRA 89: 1. doi.
Lièvre M, Granier C, Guédon Y (2016) Identifying developmental phases in the Arabidopsis thaliana rosette using integrative segmentation models. New Phytologist 210: 1466-1478. doi:10.1111/nph.13861.
Oury V, Caldeira CF, Prodhomme D, Pichon J-P, Gibon Y, Tardieu F, Turc O (2016a) Is change in ovary carbon status a cause or a consequence of maize ovary abortion in water deficit during flowering? Plant Physiology 171: 997-1008. doi:10.1104/pp.15.01130.
Oury V, Tardieu F, Turc O (2016b) Ovary apical abortion under water deficit is caused by changes in sequential development of ovaries and in silk growth rate in maize. Plant Physiology 171: 986-996. doi:10.1104/pp.15.00268.
Turc O, Bouteillé M, Fuad-Hassan A, Welcker C, Tardieu F (2016) The growth of vegetative and reproductive structures (leaves and silks) respond similarly to hydraulic cues in maize. New Phytologist 212: 377-388. doi:10.1111/nph.14053.
2015
Bac-Molenaar JA, Vreugdenhil D, Granier C, Keurentjes JJB (2015) Genome-wide association mapping of growth dynamics detects time-specific and general quantitative trait loci. Journal of Experimental Botany66: 5567-5580. doi:10.1093/jxb/erv176.
Baerenfaller K, Massonnet C, Hennig L, Russenberger D, Sulpice R, Walsh S, Stitt M, Granier C, Gruissem W (2015) A long photoperiod relaxes energy management in Arabidopsis leaf six. Current Plant Biology 2:34-45. doi:http://dx.doi.org/10.1016/j.cpb.2015.07.001.
Bresson J, Vasseur F, Dauzat M, Koch G, Granier C, Vile D (2015) Quantifying spatial heterogeneity of chlorophyll fluorescence during plant growth and in response to water stress. Plant Methods 11: 23. doi:10.1186/s13007-015-0067-5.
Cabrera-Bosquet L, Brichet N, Fournier C, Grau A, Mineau J, Negre V, Neveu P, Suard B, Tireau A, Welcker C, Tardieu F (2015a) PHENOARCH, a multiscale phenotyping platform for plant architecture, growth rate, water use efficiency and radiation use efficiency. C Welcker, R Tuberosa, F Tardieu, eds, Recent progress in drought tolerance: from genetics to modelling. DROPS and Eucarpia, Montpellier, France, 81.
Cabrera-Bosquet L, Fournier C, Welcker C, Suard B, Tardieu F (2015b) High throughput estimation of incident light, light interception and radiation-use efficiency of thousands of plants in a phenotyping platform. EPPN Plant Phenotyping Symposium, Barcelona, Spain, 51.
Coupel-Ledru A, Lebon E, Christophe A, Gallo A, Doligez A, Simonneau T (2015) Nighttime transpiration: a relevant target to breed for water-use efficiency in grapevine? 19. Journées Internationales de Viticulture GiESCO, Gruissan, France
Dapp M, Reinders J, Bediee A, Balsera C, Bucher E, Theiler G, Granier C, Paszkowski J (2015) Heterosis and inbreeding depression of epigenetic Arabidopsis hybrids. Nature Plants 1: 15092. doi:10.1038/nplants.2015.92.
Dauzat M, Bediee A, Balsera C, Rolland G, Vile D, Muller B, Negre V, Granier C (2015a) PHENOPSIS: From a phenotyping platform to a whole pipeline of analyses. EPPN Plant Phenotyping Symposium, Barcelona, 41.
Dauzat M, Bediee A, Balsera C, Rolland G, Vile D, Muller B, Negre V, Granier C (2015b) PHENOPSIS: from a phenotyping platform to a whole pipeline of analyses. C Welcker, R Tuberosa, F Tardieu, eds, Recent progress in drought tolerance: from genetics to modelling. DROPS and Eucarpia, Montpellier, France, 82.
Massonnet C, Dauzat M, Bédiée A, Vile D, Granier C (2015) Individual leaf area of early flowering Arabidopsis genotypes is more affected by drought than late flowering ones: a multi-scale analysis in 35 genetically modified lines. American Journal of Plant Sciences 6: 955-971. doi:10.4236/ajps.2015.67102.
2014
Caldeira CF, Jeanguenin L, Chaumont F, Tardieu F (2014) Circadian rhythms of hydraulic conductance and growth are enhanced by drought and improve plant performance. Nature Communications 5: 5365. doi:10.1038/ncomms6365.
Coupel-Ledru A, Lebon É, Christophe A, Doligez A, Cabrera-Bosquet L, Péchier P, Hamard P, This P, Simonneau T (2014) Genetic variation in a grapevine progeny (Vitis vinifera L. cvs Grenache×Syrah) reveals inconsistencies between maintenance of daytime leaf water potential and response of transpiration rate under drought. Journal of Experimental Botany 65: 6205-6218. doi:10.1093/jxb/eru228.
Granier C, Vile D (2014) Phenotyping and beyond: modelling the relationships between traits. Current Opinion in Plant Biology 18: 96-102. doi:http://dx.doi.org/10.1016/j.pbi.2014.02.009.
Vasseur F, Bontpart T, Dauzat M, Granier C, Vile D (2014) Multivariate genetic analysis of plant responses to water deficit and high temperature revealed contrasting adaptive strategies. Journal of Experimental Botany 65: 6457-6469. doi:10.1093/jxb/eru364.
Vile D, Bresson J, Lièvre M, Vasseur F, Balsera C, Bédiée A, Rolland G, Dauzat M, Muller B, Granier C (2014) Phenotyping and beyond: modelling the relationships between traits. Plant Biology Europe FESPB/EPSO Congress 2014, Dublin, 240.
